Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8p03
         (244 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1039 - 23866743-23866862,23866985-23867266,23867868-238679...    26   4.9  
08_01_0877 - 8607790-8608083,8608174-8608356,8608495-8608665,860...    25   6.4  
01_01_0911 - 7176355-7176372,7176502-7176756,7177352-7177615,717...    25   6.4  

>08_02_1039 -
           23866743-23866862,23866985-23867266,23867868-23867966,
           23868595-23868903
          Length = 269

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = -3

Query: 131 HTTSSNIQVDYISYFFSYLNFKLS*RILNTWNGTELISHTIN 6
           HTTS      Y   F S+ + + +   ++T+NGT+L+  +IN
Sbjct: 199 HTTSPRRSAGY--GFVSFSSKEAAEAAISTFNGTKLMGRSIN 238


>08_01_0877 -
           8607790-8608083,8608174-8608356,8608495-8608665,
           8608765-8608925,8609012-8609093,8609197-8609229,
           8609359-8609597,8609686-8609850,8609955-8610204,
           8610314-8611414,8611841-8611960,8612626-8612691
          Length = 954

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = -2

Query: 243 FFFDINTIYFYTNTVHILELQRKD--LKAFFQRLFII 139
           FF+ + +  F+T+T H+  L  KD  + A + ++ II
Sbjct: 728 FFWAMRSTDFFTSTFHVKPLMEKDEMMSALYLQVSII 764


>01_01_0911 - 7176355-7176372,7176502-7176756,7177352-7177615,
            7177691-7177810,7177910-7178041,7178136-7178252,
            7178335-7178459,7178611-7178920,7179368-7179550,
            7179643-7179787,7180126-7181355,7181454-7181563,
            7181768-7182037,7182130-7182963
          Length = 1370

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -3

Query: 122  SSNIQVDYISYFFSYLNFKLS*RILNTWNGTELISHTIN 6
            SSN +V  I+YF  Y+    S   L  W G+E I   ++
Sbjct: 1083 SSNGEVTSIAYFKGYIFSGHSDGTLKVWEGSENILRLVH 1121


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,623,317
Number of Sequences: 37544
Number of extensions: 60049
Number of successful extensions: 104
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 14,793,348
effective HSP length: 59
effective length of database: 12,578,252
effective search space used: 264143292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)