Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8p03
         (244 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL023816-6|CAA19435.1|  341|Caenorhabditis elegans Hypothetical ...    28   1.0  
AL022274-3|CAA18359.1|  341|Caenorhabditis elegans Hypothetical ...    28   1.0  
Z92785-3|CAB07202.1|  326|Caenorhabditis elegans Hypothetical pr...    27   1.3  
M22363-2|AAA28159.1|  429|Caenorhabditis elegans protein ( C.ele...    27   1.8  
L10990-5|AAB59175.1|  429|Caenorhabditis elegans Uncoordinated p...    27   1.8  
AC024801-9|AAF59653.3|  791|Caenorhabditis elegans Hypothetical ...    27   2.3  
Z77668-1|CAB01239.1|  576|Caenorhabditis elegans Hypothetical pr...    26   3.1  
L11247-2|AAK84521.1| 1274|Caenorhabditis elegans Npc1 (human nie...    25   5.4  
AL023816-2|CAA19431.1|  355|Caenorhabditis elegans Hypothetical ...    25   5.4  
AL022274-1|CAA18357.1|  349|Caenorhabditis elegans Hypothetical ...    25   5.4  
AC024791-29|AAL32249.2| 1599|Caenorhabditis elegans Lipid deplet...    25   5.4  
AF100307-1|ABB88211.1|  317|Caenorhabditis elegans Hypothetical ...    25   9.4  
AF099922-5|AAK21406.1|  401|Caenorhabditis elegans Hypothetical ...    25   9.4  

>AL023816-6|CAA19435.1|  341|Caenorhabditis elegans Hypothetical
           protein T05G11.7 protein.
          Length = 341

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -2

Query: 231 INTIYFYTNTVHILELQRKDLKAFFQRLFII 139
           ++ I F+ N VH+L L RK L+ F   LF++
Sbjct: 31  LSIIGFFANIVHLLILIRKPLRIFTIYLFLM 61


>AL022274-3|CAA18359.1|  341|Caenorhabditis elegans Hypothetical
           protein T05G11.7 protein.
          Length = 341

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -2

Query: 231 INTIYFYTNTVHILELQRKDLKAFFQRLFII 139
           ++ I F+ N VH+L L RK L+ F   LF++
Sbjct: 31  LSIIGFFANIVHLLILIRKPLRIFTIYLFLM 61


>Z92785-3|CAB07202.1|  326|Caenorhabditis elegans Hypothetical
           protein F31E9.5 protein.
          Length = 326

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -2

Query: 225 TIYFYTNTVHILELQRKDLKAFFQRLFIIY 136
           T+  Y  T H  E+ +K    FF  LF+I+
Sbjct: 54  TMLLYPTTNHFYEMTKKSFFTFFGLLFVIF 83


>M22363-2|AAA28159.1|  429|Caenorhabditis elegans protein (
           C.elegans unc-86 geneencoding two alternative proteins,
           complete cds. ).
          Length = 429

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -3

Query: 128 TTSSNIQVDYISYFFSYLNF 69
           TT+S +Q D+I + FSY N+
Sbjct: 121 TTASKMQPDFILFIFSYSNY 140


>L10990-5|AAB59175.1|  429|Caenorhabditis elegans Uncoordinated
           protein 86, isoform a protein.
          Length = 429

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -3

Query: 128 TTSSNIQVDYISYFFSYLNF 69
           TT+S +Q D+I + FSY N+
Sbjct: 121 TTASKMQPDFILFIFSYSNY 140


>AC024801-9|AAF59653.3|  791|Caenorhabditis elegans Hypothetical
           protein Y50D7A.1 protein.
          Length = 791

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -2

Query: 228 NTIYFYTNTVHILELQRKDLKAFFQRLFIIYSTYNI 121
           N  YF++   +  E   K  K FF+R+F  +   N+
Sbjct: 544 NDTYFFSEFWNFFERFEKFTKKFFKRIFTFFYNQNV 579


>Z77668-1|CAB01239.1|  576|Caenorhabditis elegans Hypothetical
           protein R11G10.2 protein.
          Length = 576

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 243 FFFDINTIYFYTNTVHILELQ 181
           +  D NT YFYTN + +   Q
Sbjct: 541 YLLDYNTTYFYTNFIKVYNYQ 561


>L11247-2|AAK84521.1| 1274|Caenorhabditis elegans Npc1 (human niemann
            pick c disease)related protein 2 protein.
          Length = 1274

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = -3

Query: 140  SIQHTTSSNIQVDYISYFFSYLNFKLS*RILNTWNGTELISHTI 9
            +I  T +  IQ  Y S FF  LN   S ++ + W   + ++  I
Sbjct: 1008 AINLTRNGKIQSAYFSTFFKKLNLSDSIQLYDAWRFAKYLADDI 1051


>AL023816-2|CAA19431.1|  355|Caenorhabditis elegans Hypothetical
           protein T05G11.3 protein.
          Length = 355

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -2

Query: 237 FDINTIYFYTNTVHILELQRKDLKAFFQRLFII 139
           F I  +  +TN  H+  L  K ++ F   +F+I
Sbjct: 6   FSITGVGVFTNIFHLAVLNNKSMRKFTINIFLI 38


>AL022274-1|CAA18357.1|  349|Caenorhabditis elegans Hypothetical
           protein H24D24.1 protein.
          Length = 349

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -2

Query: 237 FDINTIYFYTNTVHILELQRKDLKAFFQRLFII 139
           F I  I  + N  H++ L RK L+ +   +F+I
Sbjct: 34  FVIAVIGVFVNIFHLIVLTRKSLRVYTINIFLI 66


>AC024791-29|AAL32249.2| 1599|Caenorhabditis elegans Lipid depleted
           protein 3 protein.
          Length = 1599

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 140 SIQHTTSSNIQVDYISYFFSYLNFKLS 60
           S QHTT        I +FFSYL+F+++
Sbjct: 483 SRQHTTFFQYFRPKILFFFSYLHFQIN 509


>AF100307-1|ABB88211.1|  317|Caenorhabditis elegans Hypothetical
           protein T12B5.6b protein.
          Length = 317

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -3

Query: 107 VDYISYFFSYLNFKLS*RILNTWNGTELISHT 12
           VD I   F Y+   L    +  W+GTE+I +T
Sbjct: 52  VDKIGLRFDYIYLYLRKDEVEIWSGTEIIYNT 83


>AF099922-5|AAK21406.1|  401|Caenorhabditis elegans Hypothetical
           protein F56F11.2 protein.
          Length = 401

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 228 NTIYFYTNTVHILELQRKDLK 166
           NTIY Y    H+LE    D++
Sbjct: 22  NTIYVYVKVKHVLEFYAIDIR 42


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,775,392
Number of Sequences: 27780
Number of extensions: 74269
Number of successful extensions: 142
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 12,740,198
effective HSP length: 60
effective length of database: 11,073,398
effective search space used: 221467960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)