Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8p03
         (244 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   1.6  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    19   6.7  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    19   6.7  

>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.4 bits (43), Expect = 1.6
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -1

Query: 166 SLFSTFIYNLFNIQHRVTYR 107
           S F+  IY++FN + R  ++
Sbjct: 318 SAFNPIIYSIFNTEFREAFK 337


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 19.4 bits (38), Expect = 6.7
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 222 IYFYTNTVHILELQRK 175
           IYF  +  H+LEL  K
Sbjct: 28  IYFRISRRHLLELAEK 43


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 19.4 bits (38), Expect = 6.7
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = -1

Query: 184 TKKRFKSLFSTFIYNLFNIQHRVTYR 107
           +KK F+   +   +NL  +   VTY+
Sbjct: 45  SKKYFEQTLNELNFNLNYVNKGVTYK 70


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 63,664
Number of Sequences: 438
Number of extensions: 1063
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used:  4149981
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)