Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt8o22
(224 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 71 2e-14
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 71 2e-14
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 38 2e-04
SPBC11C11.02 |imp2||contractile ring protein Imp2|Schizosaccharo... 24 2.4
SPAC24B11.09 |||conserved eukaryotic protein|Schizosaccharomyces... 24 3.1
SPAC17A5.09c |||protein phosphatase regulatory subunit Glc9|Schi... 24 3.1
SPAC6F12.05c |tnr3||thiamine diphosphokinase Tnr3 |Schizosacchar... 23 5.4
SPAPB17E12.04c |csn2||COP9/signalosome complex subunit Csn2 |Sch... 23 7.2
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 23 7.2
SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|... 23 7.2
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc... 23 7.2
SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom... 22 9.5
SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr 1||... 22 9.5
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 22 9.5
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 22 9.5
SPAC5H10.06c |adh4||alcohol dehydrogenase Adh4|Schizosaccharomyc... 22 9.5
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 22 9.5
SPBC13E7.08c |||RNA polymerase II associated Paf1 complex |Schiz... 22 9.5
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 70.9 bits (166), Expect = 2e-14
Identities = 31/33 (93%), Positives = 32/33 (96%)
Frame = +1
Query: 4 WYVGEGMEEGEFSEAREDLAALEKDYEEVGMDS 102
WYVGEGMEEGEFSEAREDLAALE+DYEEVG DS
Sbjct: 411 WYVGEGMEEGEFSEAREDLAALERDYEEVGQDS 443
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 70.9 bits (166), Expect = 2e-14
Identities = 31/33 (93%), Positives = 32/33 (96%)
Frame = +1
Query: 4 WYVGEGMEEGEFSEAREDLAALEKDYEEVGMDS 102
WYVGEGMEEGEFSEAREDLAALE+DYEEVG DS
Sbjct: 407 WYVGEGMEEGEFSEAREDLAALERDYEEVGQDS 439
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 37.9 bits (84), Expect = 2e-04
Identities = 17/35 (48%), Positives = 23/35 (65%), Gaps = 3/35 (8%)
Frame = +1
Query: 4 WYVGEGMEEGEFSEAR---EDLAALEKDYEEVGMD 99
WY GEGM+E EF+EA DL + + Y+E G+D
Sbjct: 397 WYTGEGMDEMEFTEAESNMNDLVSEYQQYQEAGID 431
>SPBC11C11.02 |imp2||contractile ring protein
Imp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 670
Score = 24.2 bits (50), Expect = 2.4
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = -2
Query: 127 RLPHPRLQRSPCRLLRNPSRGQPGPHGLRRTLPPPY 20
++ H LQ P +NP+ PG TLPP Y
Sbjct: 411 QMKHLSLQEEP---KQNPTPAAPGAFPNSNTLPPRY 443
>SPAC24B11.09 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 118
Score = 23.8 bits (49), Expect = 3.1
Identities = 8/22 (36%), Positives = 11/22 (50%)
Frame = +2
Query: 17 RVWRRESSPKPVRTWLPSRRIT 82
R W + PK V W P+ + T
Sbjct: 8 RFWNHPAGPKTVHFWAPAMKWT 29
>SPAC17A5.09c |||protein phosphatase regulatory subunit
Glc9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 310
Score = 23.8 bits (49), Expect = 3.1
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +1
Query: 16 EGMEEGEFSEAREDLAALEKDYEEV 90
E MEE SEA E++ + D+ E+
Sbjct: 241 EAMEEEALSEAEENIPKKKPDFNEL 265
>SPAC6F12.05c |tnr3||thiamine diphosphokinase Tnr3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 23.0 bits (47), Expect = 5.4
Identities = 9/30 (30%), Positives = 16/30 (53%)
Frame = +2
Query: 2 TGTSVRVWRRESSPKPVRTWLPSRRITKKS 91
TG ++ + P+R W+P R TK++
Sbjct: 135 TGVHCTMYIPATKEHPLRIWVPRRSPTKQT 164
>SPAPB17E12.04c |csn2||COP9/signalosome complex subunit Csn2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 437
Score = 22.6 bits (46), Expect = 7.2
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +1
Query: 22 MEEGEFSEAREDLAALEKDYEEVG 93
M+E ++SEA+ + K Y+E G
Sbjct: 248 MQENQWSEAQTNFFESFKSYDEAG 271
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 22.6 bits (46), Expect = 7.2
Identities = 12/48 (25%), Positives = 21/48 (43%)
Frame = +2
Query: 5 GTSVRVWRRESSPKPVRTWLPSRRITKKSAWTPLKARVREPKSTKPMK 148
G ++ + E +P RTW S + + S + K + K K M+
Sbjct: 677 GENIMKYGDEIRSRPARTWFQSEKDKQASKASEAKDKKSLAKRKKQME 724
>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 22.6 bits (46), Expect = 7.2
Identities = 8/24 (33%), Positives = 14/24 (58%)
Frame = +1
Query: 4 WYVGEGMEEGEFSEAREDLAALEK 75
WY G+G+ E +++ L A+ K
Sbjct: 665 WYAGKGLGHPENEGSKDSLRAIVK 688
>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1576
Score = 22.6 bits (46), Expect = 7.2
Identities = 13/59 (22%), Positives = 22/59 (37%)
Frame = -3
Query: 183 ECKTVRVRHKRYFIGLVLFGSLTLAFSGVHADFFVILLEGSQVLTGFGELSLLHTLTDV 7
+ +TVR GL L ++ +H D V+ G + + TL D+
Sbjct: 347 DVETVRAFSNNILEGLAELHRLGISHKSLHLDNVVLFHSGHRTFAKLMDFGFTRTLRDM 405
>SPAC926.04c |hsp90|swo1|heat shock protein
Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
Length = 704
Score = 22.2 bits (45), Expect = 9.5
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +1
Query: 16 EGMEEGEFSEAREDLAALEKDYEE 87
+G+E E E + LEK+YEE
Sbjct: 522 DGLELEETDEEKAAREKLEKEYEE 545
>SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr
1|||Manual
Length = 654
Score = 22.2 bits (45), Expect = 9.5
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +1
Query: 37 FSEAREDLAALEKDYEEVGMD 99
F +ED ALEK Y++ G+D
Sbjct: 466 FVYIKEDDQALEKIYKKFGID 486
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 22.2 bits (45), Expect = 9.5
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = +1
Query: 1 DWYVGEGMEEGEFSEAREDLAALEKDYEEVG 93
++Y E E++ ++LAA D EVG
Sbjct: 53 EFYAKRASIEREYASKLQELAASSADIPEVG 83
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 22.2 bits (45), Expect = 9.5
Identities = 11/39 (28%), Positives = 18/39 (46%)
Frame = +2
Query: 53 RTWLPSRRITKKSAWTPLKARVREPKSTKPMKYLLWRTR 169
++++P + K L PKSTKP+ L T+
Sbjct: 104 KSFVPPKPAIPKGKVLSLGGNTSAPKSTKPISISLGGTK 142
>SPAC5H10.06c |adh4||alcohol dehydrogenase Adh4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 422
Score = 22.2 bits (45), Expect = 9.5
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -2
Query: 103 RSPCRLLRNPSRGQP 59
RSP RL+R+P+R P
Sbjct: 5 RSPFRLIRSPARFFP 19
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 22.2 bits (45), Expect = 9.5
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = -3
Query: 126 GSLTLAFSGVHADFFVILLEGSQVLTGFGELS 31
G L+L + + V + + Q+LT ELS
Sbjct: 860 GKLSLDLKNLRSSLNVAISDNDQILTQLAELS 891
>SPBC13E7.08c |||RNA polymerase II associated Paf1 complex
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 429
Score = 22.2 bits (45), Expect = 9.5
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +1
Query: 25 EEGEFSEAREDLAALEKDYEEVGMDS 102
EE E E E+ E+D EEVG S
Sbjct: 341 EEEEEEEQEEEQEEDEEDEEEVGAGS 366
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 721,479
Number of Sequences: 5004
Number of extensions: 12062
Number of successful extensions: 46
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 54
effective length of database: 2,092,262
effective search space used: 41845240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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