Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt8o19
(592 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z92834-2|CAB07383.1| 139|Caenorhabditis elegans Hypothetical pr... 186 1e-47
AF099919-11|AAC68796.1| 199|Caenorhabditis elegans Ubiquitin co... 58 5e-09
U08139-1|AAA83388.1| 192|Caenorhabditis elegans ubc-1 protein. 56 1e-08
AF045638-8|AAC02561.2| 192|Caenorhabditis elegans Ubiquitin con... 56 1e-08
Z68337-1|CAA92745.1| 147|Caenorhabditis elegans Hypothetical pr... 52 2e-07
S56051-1|AAB25489.2| 147|Caenorhabditis elegans ubiquitin-conju... 52 2e-07
AC025726-12|AAK73914.3| 243|Caenorhabditis elegans Ubiquitin co... 45 5e-05
Z22179-13|CAA80166.1| 164|Caenorhabditis elegans Hypothetical p... 44 6e-05
U41026-5|AAA82352.2| 546|Caenorhabditis elegans Ubiquitin conju... 42 4e-04
U39674-5|AAA80415.2| 229|Caenorhabditis elegans Ubiquitin conju... 40 0.002
AC024747-1|AAO21404.1| 203|Caenorhabditis elegans Ubiquitin con... 36 0.022
AC024876-5|AAF60891.2| 221|Caenorhabditis elegans Ubiquitin con... 34 0.066
AC024817-43|AAK93865.2| 151|Caenorhabditis elegans Ubiquitin co... 34 0.087
U40411-1|AAC47063.2| 679|Caenorhabditis elegans Ubiquitin conju... 33 0.15
AL110500-10|CAB60431.1| 170|Caenorhabditis elegans Hypothetical... 33 0.15
AL032653-6|CAA21716.1| 152|Caenorhabditis elegans Hypothetical ... 33 0.15
AF040645-12|AAB94978.2| 78|Caenorhabditis elegans Hypothetical... 32 0.35
U39674-4|AAA80414.2| 182|Caenorhabditis elegans Ubiquitin conju... 31 0.46
U00035-7|AAA50648.2| 153|Caenorhabditis elegans Ubiquitin conju... 31 0.46
Z19155-3|CAA79558.2| 812|Caenorhabditis elegans Hypothetical pr... 31 0.61
U28738-2|AAA68309.4| 982|Caenorhabditis elegans Hypothetical pr... 31 0.61
Z66520-3|CAA91389.2| 160|Caenorhabditis elegans Hypothetical pr... 31 0.81
Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical p... 29 3.3
AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane... 29 3.3
AC024798-1|AAK29914.3| 722|Caenorhabditis elegans Hypothetical ... 29 3.3
Z99284-2|CAL49452.1| 546|Caenorhabditis elegans Hypothetical pr... 27 7.5
Z92796-7|CAB63230.2| 546|Caenorhabditis elegans Hypothetical pr... 27 7.5
L14324-6|AAA28182.1| 3343|Caenorhabditis elegans Cadherin family... 27 10.0
>Z92834-2|CAB07383.1| 139|Caenorhabditis elegans Hypothetical
protein F39B2.2 protein.
Length = 139
Score = 186 bits (452), Expect = 1e-47
Identities = 81/132 (61%), Positives = 100/132 (75%), Gaps = 1/132 (0%)
Frame = +1
Query: 199 VVVPRNFRLLEELEQGQKGVGDGTISWGLESDDDMTLTHWTGMIIGPPRTPYENRMYSLK 378
V VPRNFRLLEELE+GQKG GDG ISWGLE D DMTLT WT IIGPPRTPYE+R+Y+L+
Sbjct: 2 VDVPRNFRLLEELEEGQKGKGDGNISWGLEDDSDMTLTRWTASIIGPPRTPYESRIYNLQ 61
Query: 379 IECGTRYPDEPPTARFISRIHMNCVNSQTGLVDNRQVPILARWQRDYTIKTVLQEVRR-L 555
I+CG YP EPPT RF +++HM VN G++D R + L W Y IKTVL+++R+ +
Sbjct: 62 IQCGGNYPREPPTVRFTTKVHMVGVNQSNGVIDKRNLTTLRNWSNSYMIKTVLEDIRKNM 121
Query: 556 MTLKDNMKLSQP 591
M K+N+KL QP
Sbjct: 122 MMAKENLKLQQP 133
>AF099919-11|AAC68796.1| 199|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein20 protein.
Length = 199
Score = 58.0 bits (134), Expect = 5e-09
Identities = 33/85 (38%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Frame = +1
Query: 307 LTHWTGMIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFISRIHMNCVNSQTGLVDNRQ 486
LT G I GPP TPY M+ L I+ +YP PP +F ++I V+SQTG++
Sbjct: 36 LTEIKGHIRGPPDTPYAGGMFDLDIKIPDQYPFSPPNVKFSTKIWHPNVSSQTGVI---C 92
Query: 487 VPILA-RWQRDYTIKTVLQEVRRLM 558
+ IL +W T++TVL ++ LM
Sbjct: 93 LDILKDQWAASLTLRTVLLSIQALM 117
>U08139-1|AAA83388.1| 192|Caenorhabditis elegans ubc-1 protein.
Length = 192
Score = 56.4 bits (130), Expect = 1e-08
Identities = 35/121 (28%), Positives = 62/121 (51%), Gaps = 1/121 (0%)
Frame = +1
Query: 199 VVVPRNFRLLEELEQGQKGVGDGTISWGLESDDDMTLTHWTGMIIGPPRTPYENRMYSLK 378
+ P RL+ + ++ Q+ G G ++D++ LT W +I GP TP+E+ + L
Sbjct: 1 MTTPSRRRLMRDFKKLQEDPPAGVS--GAPTEDNI-LT-WEAIIFGPQETPFEDGTFKLS 56
Query: 379 IECGTRYPDEPPTARFISRI-HMNCVNSQTGLVDNRQVPILARWQRDYTIKTVLQEVRRL 555
+E YP++PPT +FIS++ H N + +D Q RW Y + +L ++ L
Sbjct: 57 LEFTEEYPNKPPTVKFISKMFHPNVYADGSICLDILQ----NRWSPTYDVAAILTSIQSL 112
Query: 556 M 558
+
Sbjct: 113 L 113
>AF045638-8|AAC02561.2| 192|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein1 protein.
Length = 192
Score = 56.4 bits (130), Expect = 1e-08
Identities = 35/121 (28%), Positives = 62/121 (51%), Gaps = 1/121 (0%)
Frame = +1
Query: 199 VVVPRNFRLLEELEQGQKGVGDGTISWGLESDDDMTLTHWTGMIIGPPRTPYENRMYSLK 378
+ P RL+ + ++ Q+ G G ++D++ LT W +I GP TP+E+ + L
Sbjct: 1 MTTPSRRRLMRDFKKLQEDPPAGVS--GAPTEDNI-LT-WEAIIFGPQETPFEDGTFKLS 56
Query: 379 IECGTRYPDEPPTARFISRI-HMNCVNSQTGLVDNRQVPILARWQRDYTIKTVLQEVRRL 555
+E YP++PPT +FIS++ H N + +D Q RW Y + +L ++ L
Sbjct: 57 LEFTEEYPNKPPTVKFISKMFHPNVYADGSICLDILQ----NRWSPTYDVAAILTSIQSL 112
Query: 556 M 558
+
Sbjct: 113 L 113
>Z68337-1|CAA92745.1| 147|Caenorhabditis elegans Hypothetical
protein M7.1 protein.
Length = 147
Score = 52.4 bits (120), Expect = 2e-07
Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Frame = +1
Query: 307 LTHWTGMIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFISRIHMNCVNSQTGLVDNRQ 486
L HW I+GPP +PY+ ++ L I T YP +PP F +RI+ +NS +
Sbjct: 30 LFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSIC---- 85
Query: 487 VPIL-ARWQRDYTIKTVLQEVRRLM 558
+ IL ++W TI VL + L+
Sbjct: 86 LDILRSQWSPALTISKVLLSICSLL 110
>S56051-1|AAB25489.2| 147|Caenorhabditis elegans
ubiquitin-conjugating enzyme protein.
Length = 147
Score = 52.4 bits (120), Expect = 2e-07
Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Frame = +1
Query: 307 LTHWTGMIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFISRIHMNCVNSQTGLVDNRQ 486
L HW I+GPP +PY+ ++ L I T YP +PP F +RI+ +NS +
Sbjct: 30 LFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSIC---- 85
Query: 487 VPIL-ARWQRDYTIKTVLQEVRRLM 558
+ IL ++W TI VL + L+
Sbjct: 86 LDILRSQWSPALTISKVLLSICSLL 110
>AC025726-12|AAK73914.3| 243|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein3 protein.
Length = 243
Score = 44.8 bits (101), Expect = 5e-05
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 10/91 (10%)
Frame = +1
Query: 316 WTGMIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFISRI-HMN-------CVNSQTGL 471
WT I GPP+T Y+ + I + YP PP+ +F +++ H N C++
Sbjct: 42 WTVGIYGPPKTLYQGGYFKASIRFPSNYPYSPPSMKFTTKVWHPNVYENGDLCISILHSP 101
Query: 472 VDNRQVPILA--RWQRDYTIKTVLQEVRRLM 558
+D+ Q LA RW +++T+L V L+
Sbjct: 102 IDDPQSGELACERWNPTQSVRTILLSVISLL 132
>Z22179-13|CAA80166.1| 164|Caenorhabditis elegans Hypothetical
protein F58A4.10 protein.
Length = 164
Score = 44.4 bits (100), Expect = 6e-05
Identities = 35/111 (31%), Positives = 55/111 (49%), Gaps = 11/111 (9%)
Frame = +1
Query: 262 DGTISWGLESDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFISRI- 438
DG S GL D+D + W ++IGPP T YE + ++ YP +PP +FIS I
Sbjct: 21 DG-FSAGLVDDND--IYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFISEIW 77
Query: 439 HMN-------CVNSQTGLVDNR---QVPILARWQRDYTIKTVLQEVRRLMT 561
H N C++ D++ + P RW +T++T+L V ++T
Sbjct: 78 HPNIDKEGNVCISILHDPGDDKWGYERP-EERWLPVHTVETILLSVISMLT 127
>U41026-5|AAA82352.2| 546|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein23 protein.
Length = 546
Score = 41.5 bits (93), Expect = 4e-04
Identities = 26/80 (32%), Positives = 39/80 (48%)
Frame = +1
Query: 322 GMIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFISRIHMNCVNSQTGLVDNRQVPILA 501
G+I G TPYE ++ L I+ G YP + PT +FI++I V+ G + V
Sbjct: 383 GIIKGVEETPYEGGIFELDIKIGESYPFKAPTVKFITKIWHPSVSPFDGTICLHDVD-NG 441
Query: 502 RWQRDYTIKTVLQEVRRLMT 561
W TI VL ++ M+
Sbjct: 442 VWPVSMTIYKVLIVIQSWMS 461
>U39674-5|AAA80415.2| 229|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein21 protein.
Length = 229
Score = 39.5 bits (88), Expect = 0.002
Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 16/95 (16%)
Frame = +1
Query: 322 GMIIGPPRTPYENRMYSLKIECGTRYPDEPP---------------TARFISRIHMNCVN 456
G I GP TPY + +K++ YP EPP A+F++RI ++
Sbjct: 55 GFIKGPEGTPYAGGTFEIKVDIPEHYPFEPPKVTEIIFHIRAFEYIQAKFVTRIWHPNIS 114
Query: 457 SQTGLVDNRQVPILA-RWQRDYTIKTVLQEVRRLM 558
SQTG + + IL +W T++TVL ++ ++
Sbjct: 115 SQTGTI---CLDILKDKWTASLTLRTVLLSLQAML 146
>AC024747-1|AAO21404.1| 203|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein26 protein.
Length = 203
Score = 35.9 bits (79), Expect = 0.022
Identities = 21/87 (24%), Positives = 39/87 (44%)
Frame = +1
Query: 298 DMTLTHWTGMIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFISRIHMNCVNSQTGLVD 477
+ + W +IIG P+TPYE +Y K+ +P +PP ++ N++ L
Sbjct: 34 ETNILEWRYIIIGAPKTPYEGGIYMGKLLFPKDFPFKPPAILMLTPNGRFQTNTRLCLSI 93
Query: 478 NRQVPILARWQRDYTIKTVLQEVRRLM 558
+ P W +T+ T++ + M
Sbjct: 94 SDYHP--DTWNPAWTVSTIITGLMSFM 118
>AC024876-5|AAF60891.2| 221|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein8 protein.
Length = 221
Score = 34.3 bits (75), Expect = 0.066
Identities = 13/47 (27%), Positives = 28/47 (59%)
Frame = +1
Query: 334 GPPRTPYENRMYSLKIECGTRYPDEPPTARFISRIHMNCVNSQTGLV 474
GP T YEN ++ ++++ +YP + P+ F+++I ++ +G V
Sbjct: 41 GPKDTAYENGVWRIRVDMPDKYPFKSPSIGFLNKIFHPNIDEASGTV 87
>AC024817-43|AAK93865.2| 151|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein13 protein.
Length = 151
Score = 33.9 bits (74), Expect = 0.087
Identities = 22/90 (24%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Frame = +1
Query: 295 DDMTLTHWTGMIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFISRIHMNCVNSQTGLV 474
D+ ++ MI GP +P+ ++ L++ YP P RF+++I+ ++ + G +
Sbjct: 29 DESNARYFHVMIAGPDDSPFAGGVFKLELFLPEEYPMAAPKVRFMTKIYHPNID-KLGRI 87
Query: 475 DNRQVPILA-RWQRDYTIKTVLQEVRRLMT 561
+ IL +W I+TVL ++ L++
Sbjct: 88 ---CLDILKDKWSPALQIRTVLLSIQALLS 114
>U40411-1|AAC47063.2| 679|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein17 protein.
Length = 679
Score = 33.1 bits (72), Expect = 0.15
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +1
Query: 325 MIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFIS 432
+I GP TPY N ++ I T YP PP F++
Sbjct: 448 LISGPDDTPYANGLFEFDIFFPTGYPFSPPKCAFLT 483
>AL110500-10|CAB60431.1| 170|Caenorhabditis elegans Hypothetical
protein Y87G2A.9 protein.
Length = 170
Score = 33.1 bits (72), Expect = 0.15
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Frame = +1
Query: 220 RLLEELEQGQKGVGDGTISWGLESDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGTRY 399
RL+ E ++ +G I+ ++ D+ W +I GP T + N ++ +I Y
Sbjct: 8 RLMTEYKELTTRPPEGIIAAPIDEDN---FFEWECLITGPEETCFANGVFPARITFPQDY 64
Query: 400 PDEPPTARFISRI-HMN 447
P PP RF I H N
Sbjct: 65 PLSPPKMRFTCGIFHPN 81
>AL032653-6|CAA21716.1| 152|Caenorhabditis elegans Hypothetical
protein Y54E5B.4 protein.
Length = 152
Score = 33.1 bits (72), Expect = 0.15
Identities = 18/70 (25%), Positives = 32/70 (45%)
Frame = +1
Query: 220 RLLEELEQGQKGVGDGTISWGLESDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGTRY 399
RL++EL Q + +G + + +D L W ++G T Y ++ L+ G +Y
Sbjct: 8 RLMKELAQLKSEAPEGLLVDNTSTSND--LKQWKIGVVGAEGTLYAGEVFMLQFTFGPQY 65
Query: 400 PDEPPTARFI 429
P P F+
Sbjct: 66 PFNSPEVMFV 75
>AF040645-12|AAB94978.2| 78|Caenorhabditis elegans Hypothetical
protein F52C6.12 protein.
Length = 78
Score = 31.9 bits (69), Expect = 0.35
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +1
Query: 274 SWGLESDDDMTLTHWTGMIIGPPRTPYENRMYSLKI 381
S G DD L HW I+GPP +PY+ ++ L I
Sbjct: 22 STGSVGDD---LYHWQATIMGPPESPYQGGIFFLTI 54
>U39674-4|AAA80414.2| 182|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein22 protein.
Length = 182
Score = 31.5 bits (68), Expect = 0.46
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = +1
Query: 328 IIGPPRTPYENRMYSLKIECGTRYPDEPPTARFISRIHMNCVNSQTGLV 474
I GP TPYE ++ + + YP+ P +F + I V TG V
Sbjct: 35 IAGPADTPYETGVFEVDLTFPDNYPNALPQIKFQTLIWNCAVEPSTGQV 83
>U00035-7|AAA50648.2| 153|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein18 protein.
Length = 153
Score = 31.5 bits (68), Expect = 0.46
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = +1
Query: 295 DDMTLTHWTGMIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFISRIH 441
++ L WT ++I P + PY + + I YP +PP F ++I+
Sbjct: 28 EETNLLKWTVLLI-PDKEPYNKGAFKVGITFPVDYPFKPPKVAFETKIY 75
>Z19155-3|CAA79558.2| 812|Caenorhabditis elegans Hypothetical
protein F54G8.2 protein.
Length = 812
Score = 31.1 bits (67), Expect = 0.61
Identities = 13/19 (68%), Positives = 13/19 (68%)
Frame = +1
Query: 259 GDGTISWGLESDDDMTLTH 315
GDGTI W LES D MT H
Sbjct: 485 GDGTIGWVLESMDKMTFPH 503
>U28738-2|AAA68309.4| 982|Caenorhabditis elegans Hypothetical
protein T28D9.7 protein.
Length = 982
Score = 31.1 bits (67), Expect = 0.61
Identities = 21/75 (28%), Positives = 31/75 (41%)
Frame = -2
Query: 552 TSHFLKNCFDGIVTLPSSKNWDLSIIHKSSLTIDTVHMNPRNKAGCWWLIRVSCSTFNFK 373
T H +++ FD ++ K+WD+ + H R GC W SC +FK
Sbjct: 174 TGHDVESVFDTVLR----KSWDMDAV---KFLRSAAHWKSRMILGCTWPNGTSCKLSDFK 226
Query: 372 GVHSILVGCPWWANN 328
V + C WA N
Sbjct: 227 AVWTTTGLC--WAIN 239
>Z66520-3|CAA91389.2| 160|Caenorhabditis elegans Hypothetical
protein F49E12.4 protein.
Length = 160
Score = 30.7 bits (66), Expect = 0.81
Identities = 19/80 (23%), Positives = 41/80 (51%)
Frame = +1
Query: 352 YENRMYSLKIECGTRYPDEPPTARFISRIHMNCVNSQTGLVDNRQVPILARWQRDYTIKT 531
Y+N +++L ++ YP +PP +F ++ V+ T + + + + W+ + T++
Sbjct: 57 YKNMIFTLTLDVNVEYPFKPPYLKFCHNVYHPNVDPVTCELCSPML-LQENWKPETTMED 115
Query: 532 VLQEVRRLMTLKDNMKLSQP 591
VL L+ L + LS+P
Sbjct: 116 VL---LNLIVLLNEPDLSRP 132
>Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical
protein K08E5.3a protein.
Length = 3767
Score = 28.7 bits (61), Expect = 3.3
Identities = 13/56 (23%), Positives = 26/56 (46%)
Frame = +1
Query: 286 ESDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFISRIHMNCV 453
+ D++ L G PR +N+++ KI+C + + + P F+ R C+
Sbjct: 56 DGSDEVCLPWQFDCQFGSPRCISKNKLHDKKIDCYSGFDEGCPAHYFVCRDRSACI 111
>Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical
protein K08E5.3a protein.
Length = 3767
Score = 28.7 bits (61), Expect = 3.3
Identities = 13/56 (23%), Positives = 26/56 (46%)
Frame = +1
Query: 286 ESDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFISRIHMNCV 453
+ D++ L G PR +N+++ KI+C + + + P F+ R C+
Sbjct: 56 DGSDEVCLPWQFDCQFGSPRCISKNKLHDKKIDCYSGFDEGCPAHYFVCRDRSACI 111
>AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane
cell adhesion receptorMUA-3 precursor protein.
Length = 3767
Score = 28.7 bits (61), Expect = 3.3
Identities = 13/56 (23%), Positives = 26/56 (46%)
Frame = +1
Query: 286 ESDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFISRIHMNCV 453
+ D++ L G PR +N+++ KI+C + + + P F+ R C+
Sbjct: 56 DGSDEVCLPWQFDCQFGSPRCISKNKLHDKKIDCYSGFDEGCPAHYFVCRDRSACI 111
>AC024798-1|AAK29914.3| 722|Caenorhabditis elegans Hypothetical
protein Y48G9A.10 protein.
Length = 722
Score = 28.7 bits (61), Expect = 3.3
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +1
Query: 214 NFRLLEELEQGQKGVGDGTISWGLESDDDMTL 309
N +LLE +E Q + T WG+E+ D M++
Sbjct: 358 NKKLLEVIETSQYVISMDTAKWGVETSDKMSV 389
>Z99284-2|CAL49452.1| 546|Caenorhabditis elegans Hypothetical
protein H25K10.1 protein.
Length = 546
Score = 27.5 bits (58), Expect = 7.5
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -2
Query: 339 WANNHSSPMSKSHIIIAFKTPRNGSIAHSLLALFKF 232
+A NH S +HII F P+NG +L F F
Sbjct: 188 FAGNHESNSIFNHIIHRFTMPKNGVYNDNLFWSFDF 223
>Z92796-7|CAB63230.2| 546|Caenorhabditis elegans Hypothetical
protein H25K10.1 protein.
Length = 546
Score = 27.5 bits (58), Expect = 7.5
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -2
Query: 339 WANNHSSPMSKSHIIIAFKTPRNGSIAHSLLALFKF 232
+A NH S +HII F P+NG +L F F
Sbjct: 188 FAGNHESNSIFNHIIHRFTMPKNGVYNDNLFWSFDF 223
>L14324-6|AAA28182.1| 3343|Caenorhabditis elegans Cadherin family
protein 3 protein.
Length = 3343
Score = 27.1 bits (57), Expect = 10.0
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = -2
Query: 519 IVTLPSSKNWDLSIIHKSSLTIDTVHMN 436
+VT P++ W+L II++S T+ ++ N
Sbjct: 2803 VVTSPANSTWNLRIINESPETVKSLENN 2830
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,222,277
Number of Sequences: 27780
Number of extensions: 277407
Number of successful extensions: 653
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 652
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -