Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8o12
         (581 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.01 |gsk31||serine/threonine protein kinase Gsk31|Schizos...    30   0.28 
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    28   1.1  
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe...    26   4.6  
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha...    25   6.1  
SPAC5H10.12c |||acetylglucosaminyltransferase|Schizosaccharomyce...    25   8.1  
SPCC737.05 |||peroxin Pex28/29|Schizosaccharomyces pombe|chr 3||...    25   8.1  
SPAC1565.03 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   8.1  
SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   8.1  

>SPBC8D2.01 |gsk31||serine/threonine protein kinase
           Gsk31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 381

 Score = 29.9 bits (64), Expect = 0.28
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 262 PPSLEKHLEEVGKRKGFNKSVLPPFTKEEIDL 357
           PP    +L E+  R   NK++LPP   E +D+
Sbjct: 333 PPLFNFNLAELSIRPNLNKAILPPHVYESLDV 364


>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 462

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -1

Query: 341 FVKGGRTDLLNPLRLPTSSRCFSRDGGQPPS 249
           F K G+TDL  P R+P+  +  S     PPS
Sbjct: 179 FEKYGKTDLGKPARVPSPKKSLSSTIKSPPS 209


>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 5/69 (7%)
 Frame = +2

Query: 83  KLGGFMTRNSGQCITVKSRWPFP*-----SGTKHYLLSMKNLLNC*EKI*PVGIVTQSTQ 247
           +L GF+      CI+ +  W  P       GTK  LL++K++    EK+   G+ +    
Sbjct: 470 RLLGFLNGRPEWCISRQRAWGLPIPVLYEKGTKIPLLTVKSVSYIIEKMEVEGVDSWFND 529

Query: 248 RREVGHRLW 274
               GH  W
Sbjct: 530 TENNGHAQW 538


>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 720

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -3

Query: 408 QTTRVEIHSVVVVCTSNQIYFLFRE 334
           Q   + + +++V CT  Q YFLF +
Sbjct: 302 QAMNIVLAALLVYCTEEQAYFLFSQ 326


>SPAC5H10.12c |||acetylglucosaminyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 371

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +1

Query: 73  AHAKAWRIYDEEFRPMY 123
           AH K W I   EF P+Y
Sbjct: 335 AHGKFWNIGSSEFAPVY 351


>SPCC737.05 |||peroxin Pex28/29|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 264

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +1

Query: 496 SWVAGYSSWFYVTPEYFRPQIMW 564
           SW A  S W +V P  FR  I+W
Sbjct: 224 SW-APQSDWTFVPPNEFRRFILW 245


>SPAC1565.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 166

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +1

Query: 268 SLEKHLEEVGKRKGFNKSVLPPFTKEEIDLI-RGTYDYYGMNFYTS 402
           S +K  E   KR+  +K + PP T +EI  + R T      NFY+S
Sbjct: 73  SKKKKNEHFSKRRKLSKVLTPP-TNDEIKFVNRHTGSKPQPNFYSS 117


>SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 515

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +1

Query: 376 YYGMNFYTSRLVRKARPGESIGAWPMN 456
           YYG +FY + +  +    E++  WP N
Sbjct: 38  YYGESFYINIVCSRPIVDENVTTWPEN 64


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,443,694
Number of Sequences: 5004
Number of extensions: 50506
Number of successful extensions: 145
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)