Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8o12
         (581 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41557-9|AAA83309.1|  479|Caenorhabditis elegans Hypothetical pr...    55   4e-08
AF099915-3|AAC68766.1|  475|Caenorhabditis elegans Hypothetical ...    54   1e-07
Z50070-5|CAA90401.2|  270|Caenorhabditis elegans Hypothetical pr...    28   4.2  
Z82085-5|CAB04989.1|  342|Caenorhabditis elegans Hypothetical pr...    27   9.7  
U88310-1|AAB42340.1|  663|Caenorhabditis elegans Hypothetical pr...    27   9.7  

>U41557-9|AAA83309.1|  479|Caenorhabditis elegans Hypothetical
           protein C50F7.10 protein.
          Length = 479

 Score = 54.8 bits (126), Expect = 4e-08
 Identities = 48/193 (24%), Positives = 84/193 (43%), Gaps = 5/193 (2%)
 Frame = +1

Query: 16  PPIFEPHVAPYVCTKHVLLAHAKAWRIYDEEFRPMYNGEISLAIP-LIWHXXXXXXXXXX 192
           P I     APY+   ++LL HAK +R Y + ++   NG I +                  
Sbjct: 192 PEIENHEQAPYIAATNMLLTHAKIYRNYQKNYKETQNGLIGITNGGRFCLPASDSPADLD 251

Query: 193 XXXXXXNIAGRYS-HPVYSKEGGWPPSLEKHLEEVGKRKGFNKSVLPPFTKEEIDLIRGT 369
                 +    Y+  P+ +  G +P S+ + L             LP F++EE  LI+G+
Sbjct: 252 ACNRALDWLFNYTIEPILTDSGDFPASMREKLP-----------FLPKFSEEEKKLIKGS 300

Query: 370 YDYYGMNFYTSRLVRKARPGESIGAWPMNGAPDFDAAFE-KDPSW--VAGYSSWFYVTPE 540
            D+ G+N+Y S +VR    GE     P + + + DAA+   +  W  + G  +W    P+
Sbjct: 301 TDFLGINYYLSHIVRNLNDGEE----PASQS-ERDAAYAFNEGKWEKICG-ETWVRYAPD 354

Query: 541 YFRPQIMWLKEKY 579
                + ++++KY
Sbjct: 355 GLFGLLKYVRDKY 367


>AF099915-3|AAC68766.1|  475|Caenorhabditis elegans Hypothetical
           protein E02H9.5 protein.
          Length = 475

 Score = 53.6 bits (123), Expect = 1e-07
 Identities = 45/192 (23%), Positives = 83/192 (43%), Gaps = 5/192 (2%)
 Frame = +1

Query: 19  PIFEPHV-APYVCTKHVLLAHAKAWRIYDEEFRPMYNGEISLAIP--LIWHXXXXXXXXX 189
           P  E H  APY    ++LL HAK +R YD+ ++P  +G + +       +          
Sbjct: 192 PEIENHKQAPYFGAANMLLTHAKIYRNYDQNYKPTQHGILGITNGGRFCFPATDSQEDIE 251

Query: 190 XXXXXXXNIAGRYSHPVYSKEGGWPPSLEKHLEEVGKRKGFNKSVLPPFTKEEIDLIRGT 369
                   +      P+ S  G +P  + + +             +P F++EE ++I+G+
Sbjct: 252 ACNRARDWLFNFTIEPILSGSGDFPVLMRERMP-----------FIPKFSEEEKEIIKGS 300

Query: 370 YDYYGMNFYTSRLVRKARPGESIGAWPMN--GAPDFDAAFEKDPSWVAGYSSWFYVTPEY 543
            D+ G+N+Y S LVR  + GE   +   +  G    +  ++K    + G  +W    P+ 
Sbjct: 301 TDFIGINYYLSFLVRAPKDGEKASSQSQHDGGYVFVEGKWDK----ICG-ETWIRYAPDG 355

Query: 544 FRPQIMWLKEKY 579
               + ++KEKY
Sbjct: 356 LLKILRYVKEKY 367


>Z50070-5|CAA90401.2|  270|Caenorhabditis elegans Hypothetical
           protein F43G6.4 protein.
          Length = 270

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = -2

Query: 286 PDASPETVANLPPLSRLGDYTDRLYFLLAIQQVLHAQQIMLRARSGEWP 140
           P +SP +    PPL     +  + YF L I Q++  QQ   R  SG  P
Sbjct: 17  PTSSPSSAVFPPPLHIFPPHMQQQYF-LNIMQLVQQQQYQQRLSSGGSP 64


>Z82085-5|CAB04989.1|  342|Caenorhabditis elegans Hypothetical
           protein ZK218.6 protein.
          Length = 342

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +1

Query: 250 EGGWPPSLEKHLEEVGKRKGFNKSVLPPFTKEEID 354
           + G  P   KH +++G R    KS  P F   EID
Sbjct: 85  KSGMDPKALKHRDKIGPRSPKMKSNKPQFQSAEID 119


>U88310-1|AAB42340.1|  663|Caenorhabditis elegans Hypothetical
           protein C24G7.4 protein.
          Length = 663

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -3

Query: 471 KIRGSVHWPGSDRFAGPRLPHQTTR 397
           ++R  ++ P +D  A  RLPHQT+R
Sbjct: 603 ELRRQLNQPSTDGIARIRLPHQTSR 627


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,548,589
Number of Sequences: 27780
Number of extensions: 288385
Number of successful extensions: 790
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 790
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)