Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8o12
         (581 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   2.9  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   5.1  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   8.9  
AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.            21   8.9  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   8.9  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +2

Query: 53  VLSMFCWLTPKLGGFMTRNSGQCIT 127
           V+S  CW    LGG  + ++G  +T
Sbjct: 8   VMSCCCWCCDNLGGPGSSSAGGVVT 32


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 389 ISTRVVWCGRRGPANLSEPG 448
           +ST V+ CG    AN+++ G
Sbjct: 442 VSTTVILCGSPPSANIAKEG 461


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -3

Query: 93  PPSFGVSQQNMLS 55
           PP+FGVSQ + +S
Sbjct: 381 PPNFGVSQVSPVS 393


>AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.
          Length = 122

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +1

Query: 517 SWFYVTPEYFRPQIMWLKE 573
           ++F +   + RP+I WLK+
Sbjct: 41  TFFCMATGFPRPEITWLKD 59


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 11/42 (26%), Positives = 18/42 (42%)
 Frame = +1

Query: 271  LEKHLEEVGKRKGFNKSVLPPFTKEEIDLIRGTYDYYGMNFY 396
            L+K    + +  GF K+ +    + E   I     Y G +FY
Sbjct: 1029 LDKIFLALSRESGFKKTYVQDLIQAEASQIYDMLVYEGGHFY 1070


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,634
Number of Sequences: 438
Number of extensions: 3961
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16870914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)