Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8o07
         (587 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S...    31   0.12 
SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog, Rhp...    26   3.5  
SPCC330.12c |sdh3||succinate dehydrogenase |Schizosaccharomyces ...    26   4.7  
SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|c...    26   4.7  
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    25   6.2  
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac...    25   6.2  
SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe...    25   6.2  
SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit...    25   6.2  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    25   6.2  
SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1 re...    25   8.2  
SPBC1539.10 |||ribosome biogenesis protein Nop16 |Schizosaccharo...    25   8.2  
SPBC14F5.09c |ade8||adenylosuccinate lyase Ade8|Schizosaccharomy...    25   8.2  

>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1842

 Score = 31.1 bits (67), Expect = 0.12
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = +3

Query: 192  EESSSLTHDAHFWLGSKTTQDKKGSAAIWTITLDDMLGGRAVHHREVQGHESS 350
            E+ +  T    FW    T    +G+ A+W +T+DD LG  + H    + +E +
Sbjct: 1460 EKEALNTFGNEFWKRDPTIAPIRGALAVWGLTIDD-LGVASFHGTSTKANEKN 1511


>SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog,
           Rhp9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = +2

Query: 179 VEDHGGVILADPRRPLLAGQQDHSGQKGLRCHMDDHVRRHAGRQS 313
           V+DHGG++L    RPL       S QK LR H+    R  +  Q+
Sbjct: 565 VQDHGGLVLDTGLRPLF-NDPFKSKQKKLR-HLKPQKRSKSWNQA 607


>SPCC330.12c |sdh3||succinate dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 180

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -3

Query: 327 RGDAQLCRPACRLT*SSIWQRS 262
           R  AQL RPA R T  ++W+RS
Sbjct: 15  RPAAQLLRPAGRSTLRNVWRRS 36


>SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 297

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +2

Query: 353 VSELFQASHQIPRRRERVWLQR 418
           V +L++ S +I  RRER WLQR
Sbjct: 80  VYDLYRDSPKIWLRRERQWLQR 101


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1639

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +2

Query: 287  VRRHAGRQSCASPRGPGTRVQFVS 358
            V  H G  SC S RG GTR  + +
Sbjct: 1196 VELHNGSMSCQSRRGVGTRFMWTA 1219


>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
           Smc6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1140

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = +1

Query: 52  RIRCLRRQETRPA*RSGLLRTSSRFPLIPSTMGN 153
           RIR  R Q+ RP  +S L R+SS   LI    GN
Sbjct: 42  RIRASRNQDNRPERQSRLQRSSS---LIEQVRGN 72


>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 273

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 12/49 (24%), Positives = 24/49 (48%)
 Frame = -1

Query: 458 LQETFLSTSVGLHFVEARLVPAFEVSDGWLEIAQKQTGLVSLDLAVMHS 312
           + ETFL  S+   F  + L P FE+   W  +      +  L++ ++++
Sbjct: 98  ISETFLFASIFWAFFHSSLSPTFELGAVWPPVGIADKTIDPLEVPLLNT 146


>SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit
           Prp3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 542

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = +2

Query: 134 SQVLWEILQRRLLHRVEDHGGVILADPRRPLLAGQQDHSGQKGLRC 271
           ++V  ++ +RRL H  E+    +  + R+     ++D     GLRC
Sbjct: 355 AEVRKQVEERRLRHERENEERKLTPEERKEKAFRKKDEDSAAGLRC 400


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1562

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = -3

Query: 135 DQREPARSSQ*SRSLCRPGFLPPQTPDSPFSPVTVR*RHRPNV 7
           D+REP R+S+           PPQ P SP SP +     +PN+
Sbjct: 360 DEREPERTSED----------PPQLPPSPSSPSSPALSVKPNI 392


>SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1
           related|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 773

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = +3

Query: 54  NPVFEEAGNQAGIEIWTIENFEPVPFDPKYYGKFYNGDSYIVL 182
           N +F  A       +   E+FEP    P Y   F++G   +VL
Sbjct: 695 NQIFTGAWEWTSTVLEKHEDFEPEELYPDYTRDFFDGKHNVVL 737


>SPBC1539.10 |||ribosome biogenesis protein Nop16
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 209

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
 Frame = +3

Query: 63  FEEAGNQAGIEIWTIENFEPVPFDPKYYGKFYNGDS----YIVLKTTE 194
           FE A  Q  I  +  E+FE +  D K   K +NG      YI +K T+
Sbjct: 162 FEHAYIQRLINKYGTEDFESMAKDVKLNSKLFNGSKLKNLYIRMKATK 209


>SPBC14F5.09c |ade8||adenylosuccinate lyase Ade8|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 482

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 17/78 (21%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
 Frame = +3

Query: 276 WTITLDDMLGGRAVHHREVQ----GHESSLFLSYFKPAIR-YLEGGNESGFNEVQTNAGA 440
           W++   D+      H++  Q    G  ++L++      +R ++   N+ GF  V+   G 
Sbjct: 142 WSLRYKDIPTLGFTHYQPAQLTTVGKRATLWIQELLWDLRNFVRARNDIGFRGVKGTTGT 201

Query: 441 EKRLLKLSGCDNMRIEEV 494
           +   L L   D+ ++EE+
Sbjct: 202 QASFLALFEGDHAKVEEL 219


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,434,944
Number of Sequences: 5004
Number of extensions: 50987
Number of successful extensions: 166
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)