Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8o07
         (587 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    25   0.73 
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   2.2  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    21   9.0  

>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 24.6 bits (51), Expect = 0.73
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +3

Query: 99  WTIEN-FEPVPFDPKYYGKFYNG-DSYIVLKTTEESSSLTHD 218
           +TI+  +E    D  +  K  N  D Y+VL+ T+ +  L+HD
Sbjct: 265 YTIDRLYELTKIDKWFLHKMKNIIDYYLVLENTDHTKQLSHD 306


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 27/115 (23%), Positives = 41/115 (35%), Gaps = 1/115 (0%)
 Frame = +2

Query: 185 DHGGVILADPRRPLLAGQQDHSGQKGLRCHMDDHVRRHAGRQSCASPRGPGTRVQF-VSE 361
           DH G +L  P  P L   Q H        HM     +H  +      +     + +   +
Sbjct: 149 DHQGSVLDGPDSPPLVESQMHHQMHTQHPHMQPQQGQHQSQAQQQHLQAHEQHMMYQQQQ 208

Query: 362 LFQASHQIPRRRERVWLQRSADQRWC*ETSPEAVRMRQHEDRGGRSRGLVSDKEP 526
             QA+ Q  +       Q+ A Q     TSP + + +Q   +G  S  L S   P
Sbjct: 209 QSQAASQQSQPGMHPRQQQQAQQHQGVVTSPLS-QQQQAAPQGAASANLPSPLYP 262


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = +3

Query: 33  RLLVKMENPVFEEAGNQAGIEIWTIENFEPVP 128
           + +  M+     E     GIEIW  + F  VP
Sbjct: 53  KTMAMMKGEYIPENALPVGIEIWRNKLFVTVP 84


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,998
Number of Sequences: 438
Number of extensions: 3519
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17115420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)