Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt8o06
(638 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0243 + 18629793-18630047,18630362-18630442,18631911-186323... 31 0.77
07_03_0425 - 18070607-18070712,18071771-18072744 31 1.0
02_03_0016 + 13962086-13962326,13962529-13962614,13962652-139627... 31 1.0
04_01_0020 + 307110-307809,308412-308476,309245-309544 30 1.3
01_01_0244 - 2005152-2005649,2006186-2006254 29 3.1
07_03_0418 + 17979504-17980964 29 4.1
07_03_0415 + 17920383-17921843 29 4.1
02_04_0352 + 22278514-22278721,22278871-22279136,22279228-22279833 28 7.2
07_03_0918 - 22581625-22581687,22581773-22581868,22581980-225822... 27 9.5
07_01_1139 - 10684647-10685837,10685877-10686251,10686351-106865... 27 9.5
06_01_0730 + 5370575-5370761,5371395-5371438,5372057-5372204,537... 27 9.5
01_07_0089 - 40999824-41000111,41000184-41000321,41000359-410008... 27 9.5
01_01_1022 - 8064032-8064657,8064823-8064893,8065926-8066047,806... 27 9.5
>06_03_0243 +
18629793-18630047,18630362-18630442,18631911-18632305,
18632471-18632926,18633156-18633247,18633528-18633683,
18635657-18636057
Length = 611
Score = 31.1 bits (67), Expect = 0.77
Identities = 16/33 (48%), Positives = 19/33 (57%)
Frame = -3
Query: 393 RPLVDSLGGNGVAHVTSWPAPSKASTIPLPREL 295
R +V LGG G + PAP+ AST PLP L
Sbjct: 338 RAVVVLLGGRGPEPAAASPAPAAASTPPLPLSL 370
>07_03_0425 - 18070607-18070712,18071771-18072744
Length = 359
Score = 30.7 bits (66), Expect = 1.0
Identities = 17/38 (44%), Positives = 22/38 (57%)
Frame = +2
Query: 242 SARAYHVLCVFPIPSRSHNSLGKGIVDALLGAGHEVTW 355
+A A HVL VFP P++ H + LLGAG VT+
Sbjct: 4 AAAAAHVL-VFPFPAQGHINCMMHFATGLLGAGLHVTF 40
>02_03_0016 +
13962086-13962326,13962529-13962614,13962652-13962750,
13963022-13963131,13964024-13964083,13964220-13964304
Length = 226
Score = 30.7 bits (66), Expect = 1.0
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = -2
Query: 583 GLRDDRVVFPADDRLLQRWYREGQPRDIGSEGPD 482
G + VV ADD + RWY +GQ D EG D
Sbjct: 93 GAEAESVVVFADDAAVVRWYSDGQAVDPRYEGDD 126
>04_01_0020 + 307110-307809,308412-308476,309245-309544
Length = 354
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +2
Query: 239 TSARAYHVLCVFPIPSRSHNSLGKGIVDALLGAGHEVT 352
T RA ++ F +P ++ G++DAL G GH +T
Sbjct: 13 TCIRALELIFTFVVPMTLKATIKLGLLDALTGGGHALT 50
>01_01_0244 - 2005152-2005649,2006186-2006254
Length = 188
Score = 29.1 bits (62), Expect = 3.1
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = -3
Query: 393 RPLVDSLGGNGVAHVTSWPAPSKASTIPLPREL 295
R +V LGG G + PAP+ AS PLP L
Sbjct: 92 RAVVVLLGGRGPEPAAASPAPAAASAPPLPLSL 124
>07_03_0418 + 17979504-17980964
Length = 486
Score = 28.7 bits (61), Expect = 4.1
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = +2
Query: 242 SARAYHVLCVFPIPSRSHNSLGKGIVDALLGAGHEVTW 355
+A A HVL VFP P + H + L+GAG VT+
Sbjct: 4 AAAAAHVL-VFPAPGQGHINCMMHFATGLVGAGLHVTF 40
>07_03_0415 + 17920383-17921843
Length = 486
Score = 28.7 bits (61), Expect = 4.1
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = +2
Query: 242 SARAYHVLCVFPIPSRSHNSLGKGIVDALLGAGHEVTW 355
+A A HVL VFP P + H + L+GAG VT+
Sbjct: 4 AAAAAHVL-VFPAPGQGHINCMMHFATGLVGAGLHVTF 40
>02_04_0352 + 22278514-22278721,22278871-22279136,22279228-22279833
Length = 359
Score = 27.9 bits (59), Expect = 7.2
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = -3
Query: 423 EAVALTSIIFRPLVDSLGGNGVAHVTSWPAPSKASTIPLP 304
+ V L PL+D GG G A TS A + A+ P P
Sbjct: 204 DVVGLAPCALPPLMDVSGGGGGAGTTSLSATAGAAAAPPP 243
>07_03_0918 -
22581625-22581687,22581773-22581868,22581980-22582268,
22582341-22582477,22582567-22582683,22583277-22583440,
22583542-22583756,22583838-22584004,22584206-22584559,
22584647-22584795,22584907-22585030,22585132-22585371,
22585723-22586140,22586297-22586920,22586999-22587183,
22587302-22587412,22587583-22587789,22587869-22587967,
22588063-22588159,22588296-22588384,22588495-22588548,
22588671-22588793,22588872-22588940,22589020-22589089,
22589202-22589260,22589367-22589570,22590032-22590060,
22590375-22590433,22590513-22590634,22591637-22591830,
22591974-22592088
Length = 1680
Score = 27.5 bits (58), Expect = 9.5
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = -3
Query: 552 LTIAC-CSAGTERDSLVILAAKVLINAIPASAF 457
L + C C T DS V+ KVL+NA+ ++ F
Sbjct: 130 LNMVCGCVDNTSSDSTVLQVLKVLLNAVASNRF 162
>07_01_1139 -
10684647-10685837,10685877-10686251,10686351-10686534,
10686699-10686895
Length = 648
Score = 27.5 bits (58), Expect = 9.5
Identities = 16/70 (22%), Positives = 32/70 (45%)
Frame = +2
Query: 365 FPPKESTKGLKIIDVSATASVSEMIDMNDQRNADAGIALIRTFAANITRLSLSVPALQQA 544
F K S K L T ++S+ + ND+ + ++ + + +L+ VPA +
Sbjct: 217 FSNKPSLKDLVFAQAKTTDALSKKLAANDKILENINLSFNKMIETQLAQLTSYVPANETG 276
Query: 545 IVSGKYDAVV 574
+ G+ D+ V
Sbjct: 277 RIPGQPDSSV 286
>06_01_0730 +
5370575-5370761,5371395-5371438,5372057-5372204,
5372289-5372397,5373349-5373863,5374571-5374808,
5375296-5375560,5375740-5375844,5375950-5376015,
5376562-5377020,5377267-5377464,5378149-5378211
Length = 798
Score = 27.5 bits (58), Expect = 9.5
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Frame = +1
Query: 475 RVDQDLRCQYHEAVPLGTSAAAGDRQRE---IRRGRHGVLLQRCRGGLRGS 618
RV+ D R Y G +A + RE +R RHGV+ R G +GS
Sbjct: 104 RVENDQRRAYSHGQASGNTAESHGPNREFRVVRDSRHGVVENRPELGHKGS 154
>01_07_0089 -
40999824-41000111,41000184-41000321,41000359-41000840,
41001532-41001601
Length = 325
Score = 27.5 bits (58), Expect = 9.5
Identities = 13/30 (43%), Positives = 14/30 (46%)
Frame = +1
Query: 466 CWYRVDQDLRCQYHEAVPLGTSAAAGDRQR 555
CWYRV LR H A L +AA R
Sbjct: 57 CWYRVVAALRAAGHRATALDMAAAGAHPAR 86
>01_01_1022 -
8064032-8064657,8064823-8064893,8065926-8066047,
8066540-8066689,8067153-8067179,8067485-8067552,
8067679-8067874
Length = 419
Score = 27.5 bits (58), Expect = 9.5
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +1
Query: 163 LYFDSALKLFRHEVSPVAALLGVCCDVSARVPRA 264
L ++ KLF ++ A++LGVC V R+ R+
Sbjct: 45 LSYEEISKLFSLPIAEAASILGVCTSVLKRICRS 78
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,308,776
Number of Sequences: 37544
Number of extensions: 341636
Number of successful extensions: 1113
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1084
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1113
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -