Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt8o02
(548 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 87 2e-18
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 41 1e-04
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 37 0.002
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 35 0.007
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 35 0.009
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 34 0.012
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 33 0.021
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 32 0.064
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 31 0.11
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 27 1.4
SPBC16D10.09 |pcn1|pcn|PCNA |Schizosaccharomyces pombe|chr 2|||M... 27 1.4
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 27 2.4
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 27 2.4
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 26 3.2
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 26 4.2
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce... 25 7.3
SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|ch... 25 9.7
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 86.6 bits (205), Expect = 2e-18
Identities = 41/63 (65%), Positives = 48/63 (76%)
Frame = +1
Query: 331 DDVGWKSKLKIPPKDRRIKTSDVTDTRGNEFEEFCLKRELLMGIFEKGWEKPSPIQEASI 510
D +K ++K P D R KT DVT TRG EFE++ LKRELLMGIFE G+E+PSPIQE SI
Sbjct: 16 DRESFKGQMKAQPVDMRPKTEDVTKTRGTEFEDYYLKRELLMGIFEAGFERPSPIQEESI 75
Query: 511 PIA 519
PIA
Sbjct: 76 PIA 78
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 40.7 bits (91), Expect = 1e-04
Identities = 34/102 (33%), Positives = 51/102 (50%), Gaps = 7/102 (6%)
Frame = +1
Query: 232 DKFGKMMTENRISSSNHVGNSISQTKGEVDKSIDDVGWKSKLKIPPKDR-RIKTSDV-TD 405
D+ G +TEN + S + + T E + +S L IP K+ R+K +D+ D
Sbjct: 49 DRLGPKITENVDAKSEQ--DKATNTIAEDANTKQSENDESNL-IPNKNEVRVKLADLQAD 105
Query: 406 TRG-----NEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPI 516
FEE LK ELL GI+ ++KPS IQE ++P+
Sbjct: 106 PNSPLFSVKSFEELELKPELLKGIYSMKFQKPSKIQEKALPL 147
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 37.1 bits (82), Expect = 0.002
Identities = 26/88 (29%), Positives = 42/88 (47%)
Frame = +1
Query: 253 TENRISSSNHVGNSISQTKGEVDKSIDDVGWKSKLKIPPKDRRIKTSDVTDTRGNEFEEF 432
T+N+ +VG ++S +D G K+ +RR K N F+
Sbjct: 25 TDNQKDKHENVGENVSD---------EDDGNYIASKLLESNRRTKGKKGNGKASN-FQSM 74
Query: 433 CLKRELLMGIFEKGWEKPSPIQEASIPI 516
L + LL IF+KG++ P+PIQ +IP+
Sbjct: 75 GLNQTLLRAIFKKGFKAPTPIQRKTIPL 102
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 35.1 bits (77), Expect = 0.007
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +1
Query: 421 FEEFCLKRELLMGIFEKGWEKPSPIQEASIP 513
F +F LK ELL I + G+E PS +Q+ IP
Sbjct: 53 FRDFLLKPELLRAITDSGFEHPSEVQQVCIP 83
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 34.7 bits (76), Expect = 0.009
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = +1
Query: 415 NEFEEFCLKRELLMGIFEKGWEKPSPIQEASI 510
+ FEE LK +LL GI+ G+E PS +Q +I
Sbjct: 21 SSFEEMNLKEDLLRGIYAYGYETPSAVQSRAI 52
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 34.3 bits (75), Expect = 0.012
Identities = 15/30 (50%), Positives = 22/30 (73%)
Frame = +1
Query: 421 FEEFCLKRELLMGIFEKGWEKPSPIQEASI 510
F++ LK ELL GI+ G+E+PS IQ+ +I
Sbjct: 21 FDDMNLKPELLRGIYAYGFERPSAIQQRAI 50
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 33.5 bits (73), Expect = 0.021
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +1
Query: 385 KTSDVTDTRGNEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIA 519
K + T + F+ L R +L G+ G+E P+ IQ+ +IP+A
Sbjct: 249 KEKSMMTTTHSSFQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLA 293
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 31.9 bits (69), Expect = 0.064
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 10/72 (13%)
Frame = +1
Query: 331 DDVGWKSKL--KIPPKDRRIKTSDVT-DTRGNE-------FEEFCLKRELLMGIFEKGWE 480
DDV W+ K + P+D RI D +G++ +EE L E+L + + ++
Sbjct: 211 DDVPWREKPLEAMKPRDWRILKEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYK 270
Query: 481 KPSPIQEASIPI 516
+PS IQ A+IP+
Sbjct: 271 EPSSIQRAAIPV 282
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 31.1 bits (67), Expect = 0.11
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +1
Query: 415 NEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPI 516
NEF L LL I G+ +P+P+Q+ SIPI
Sbjct: 169 NEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPI 202
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 27.5 bits (58), Expect = 1.4
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 430 FCLKRELLMGIFEKGWEKPSPIQEASIPIA 519
F L E+L + + G+ KP PIQ IP A
Sbjct: 127 FSLSPEMLGSLSKAGFSKPMPIQSLVIPEA 156
>SPBC16D10.09 |pcn1|pcn|PCNA |Schizosaccharomyces pombe|chr
2|||Manual
Length = 260
Score = 27.5 bits (58), Expect = 1.4
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 28 NSCDVVVEYRVSSPFLNFYLA 90
N ++VEY++ S FL FYLA
Sbjct: 231 NDVPLLVEYKMESGFLRFYLA 251
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 26.6 bits (56), Expect = 2.4
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 421 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIAPKWK 531
F +F L L I + +EKP+ +Q +IP+A + K
Sbjct: 16 FSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGK 52
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 26.6 bits (56), Expect = 2.4
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +1
Query: 421 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIA 519
FEE +L + + G+E P+PIQ+ + P+A
Sbjct: 124 FEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMA 156
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 26.2 bits (55), Expect = 3.2
Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Frame = +1
Query: 403 DTRGNE----FEEFCLKRELLMGIFEKGWEKPSPIQEASIPI 516
D++ NE F+E + EL + G++ P+PIQ+ +IP+
Sbjct: 38 DSQNNEAPKTFKELGVIDELCEACEKLGFKTPTPIQQEAIPV 79
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 25.8 bits (54), Expect = 4.2
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = +1
Query: 262 RISSSNHVGNSISQTKGEVDKSIDDVGWKSKLKIPPKDRRIKTSDVTDT 408
R+ SS + ++ + E+DK+ D G +KLK PK ++T D+ T
Sbjct: 1315 RVDSSFYTSENLRR---ELDKAFDRSGTAAKLK-HPKKTVVETLDILTT 1359
>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1008
Score = 25.0 bits (52), Expect = 7.3
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = +1
Query: 475 WEKPSPIQEASIPIAPKWKRCT 540
W P P +A+ P+AP ++ T
Sbjct: 572 WNAPIPYPDANCPMAPTYRNLT 593
>SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 547
Score = 24.6 bits (51), Expect = 9.7
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -1
Query: 416 LPLVSVTSLVFILLSFGG 363
LPL SVT ++F++ GG
Sbjct: 174 LPLYSVTLVIFVVFQIGG 191
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,936,472
Number of Sequences: 5004
Number of extensions: 33987
Number of successful extensions: 131
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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