Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt8o02
(548 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0613 + 26617677-26617963,26618726-26618786,26619598-266198... 99 1e-21
02_05_0096 + 25785995-25786311,25786716-25786776,25787825-257880... 99 1e-21
10_08_0553 - 18720436-18720494,18721102-18721106,18721136-187212... 95 3e-20
12_02_0340 - 17725866-17725884,17726046-17726326,17726842-177269... 38 0.007
03_05_0052 - 20293197-20293310,20293938-20294024,20294133-202942... 33 0.11
03_05_0865 - 28365430-28367640 33 0.20
01_06_0020 + 25630728-25631023,25631308-25631548,25631629-256317... 33 0.20
06_03_1284 - 28988287-28988922,28989335-28989765,28989850-289899... 32 0.26
02_01_0355 + 2558792-2558862,2558993-2559099,2559185-2559615,256... 32 0.26
08_02_0671 - 19890187-19890295,19891186-19891320,19891551-198919... 30 1.4
06_03_0674 + 23422004-23422552,23423295-23423369,23424360-234244... 30 1.4
03_05_0997 + 29565311-29565664,29566134-29566298,29566572-295666... 30 1.4
06_03_1255 + 28780181-28781172,28782065-28782932 29 2.4
08_01_0353 - 3107628-3107774,3108177-3108213,3108248-3109164,310... 29 3.2
06_01_1195 + 10280864-10280979,10281024-10281115,10281211-102821... 29 3.2
10_03_0002 - 6858257-6861205 27 7.5
02_05_0021 - 25101738-25101881,25119662-25120331,25122562-251237... 27 9.9
>04_04_0613 +
26617677-26617963,26618726-26618786,26619598-26619832,
26619958-26620196,26620493-26620744,26620844-26621024,
26621810-26621898,26622200-26622273,26622365-26622443
Length = 498
Score = 99 bits (238), Expect = 1e-21
Identities = 45/68 (66%), Positives = 57/68 (83%)
Frame = +1
Query: 316 VDKSIDDVGWKSKLKIPPKDRRIKTSDVTDTRGNEFEEFCLKRELLMGIFEKGWEKPSPI 495
+D S D WK++LK+PP+D R +T DVT T+GNEFE++ LKRELLMGI+EKG+E+PSPI
Sbjct: 93 IDSSSQD--WKAQLKLPPQDTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPI 150
Query: 496 QEASIPIA 519
QE SIPIA
Sbjct: 151 QEESIPIA 158
>02_05_0096 +
25785995-25786311,25786716-25786776,25787825-25788059,
25788292-25788530,25789700-25789951,25790043-25790223,
25790864-25790952,25791269-25791342,25791481-25791584,
25791919-25791957,25792324-25792436
Length = 567
Score = 99 bits (238), Expect = 1e-21
Identities = 45/68 (66%), Positives = 57/68 (83%)
Frame = +1
Query: 316 VDKSIDDVGWKSKLKIPPKDRRIKTSDVTDTRGNEFEEFCLKRELLMGIFEKGWEKPSPI 495
+D S D WK++LK+PP+D R +T DVT T+GNEFE++ LKRELLMGI+EKG+E+PSPI
Sbjct: 103 IDSSSQD--WKAQLKLPPQDTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPI 160
Query: 496 QEASIPIA 519
QE SIPIA
Sbjct: 161 QEESIPIA 168
>10_08_0553 -
18720436-18720494,18721102-18721106,18721136-18721257,
18721390-18721478,18722136-18722316,18722403-18722654,
18722755-18722993,18723680-18723914,18724072-18724132,
18724632-18724987
Length = 532
Score = 95.1 bits (226), Expect = 3e-20
Identities = 44/68 (64%), Positives = 55/68 (80%)
Frame = +1
Query: 316 VDKSIDDVGWKSKLKIPPKDRRIKTSDVTDTRGNEFEEFCLKRELLMGIFEKGWEKPSPI 495
VD S +D WK++L +P D R +T DVT T+GNEFE++ LKRELLMGI+EKG+E+PSPI
Sbjct: 116 VDSSSED--WKAQLNLPAPDTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPI 173
Query: 496 QEASIPIA 519
QE SIPIA
Sbjct: 174 QEESIPIA 181
>12_02_0340 -
17725866-17725884,17726046-17726326,17726842-17726928,
17727018-17727113,17728484-17728585,17728720-17728762,
17728834-17728952,17729348-17729444,17730153-17730214,
17730370-17730432,17730847-17730949,17731402-17731497,
17731594-17731742,17732356-17732529,17733078-17733156,
17733807-17733913,17733994-17734062,17734879-17735043,
17735206-17735703
Length = 802
Score = 37.5 bits (83), Expect = 0.007
Identities = 21/78 (26%), Positives = 36/78 (46%)
Frame = +1
Query: 286 GNSISQTKGEVDKSIDDVGWKSKLKIPPKDRRIKTSDVTDTRGNEFEEFCLKRELLMGIF 465
G + +G+ + + ++ K + + +S+ N F E L R LL
Sbjct: 151 GEEEEKEEGDEEAAEEEEETDKKSGVVDPSKFFASSEGASFHANSFLELNLSRPLLRACE 210
Query: 466 EKGWEKPSPIQEASIPIA 519
G++KP+PIQ A IP+A
Sbjct: 211 ALGYQKPTPIQAACIPLA 228
>03_05_0052 -
20293197-20293310,20293938-20294024,20294133-20294270,
20295009-20295128,20295236-20295343,20296053-20296133,
20296216-20296456,20297010-20297305
Length = 394
Score = 33.5 bits (73), Expect = 0.11
Identities = 15/35 (42%), Positives = 25/35 (71%), Gaps = 1/35 (2%)
Frame = +1
Query: 415 NEFEEFCLKRELLMGIFEKGWEKPSPIQE-ASIPI 516
+ F++ ++ +LL GI+ G+EKPS IQ+ A +PI
Sbjct: 31 SSFDQMGIREDLLRGIYAYGFEKPSAIQQRAVLPI 65
>03_05_0865 - 28365430-28367640
Length = 736
Score = 32.7 bits (71), Expect = 0.20
Identities = 15/33 (45%), Positives = 23/33 (69%)
Frame = +1
Query: 418 EFEEFCLKRELLMGIFEKGWEKPSPIQEASIPI 516
++ E L ELL + + G+++PSPIQ ASIP+
Sbjct: 316 KWSESKLGTELLRAVEKAGYKEPSPIQMASIPL 348
>01_06_0020 +
25630728-25631023,25631308-25631548,25631629-25631709,
25632109-25632216,25632329-25632448,25632806-25632943,
25633064-25633150,25633802-25633915
Length = 394
Score = 32.7 bits (71), Expect = 0.20
Identities = 15/35 (42%), Positives = 25/35 (71%), Gaps = 1/35 (2%)
Frame = +1
Query: 415 NEFEEFCLKRELLMGIFEKGWEKPSPIQE-ASIPI 516
+ F++ ++ +LL GI+ G+EKPS IQ+ A +PI
Sbjct: 31 SSFDQMGIRDDLLRGIYAYGFEKPSAIQQRAVLPI 65
>06_03_1284 -
28988287-28988922,28989335-28989765,28989850-28989956,
28990066-28990136
Length = 414
Score = 32.3 bits (70), Expect = 0.26
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +1
Query: 421 FEEFCLKRELLMGIFEKGWEKPSPIQEASI 510
F++ L+ LL GI+ G+EKPS IQ+ I
Sbjct: 43 FDDMGLQENLLRGIYAYGFEKPSAIQQRGI 72
>02_01_0355 +
2558792-2558862,2558993-2559099,2559185-2559615,
2560100-2560735
Length = 414
Score = 32.3 bits (70), Expect = 0.26
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +1
Query: 421 FEEFCLKRELLMGIFEKGWEKPSPIQEASI 510
F++ L+ LL GI+ G+EKPS IQ+ I
Sbjct: 43 FDDMGLQENLLRGIYAYGFEKPSAIQQRGI 72
>08_02_0671 -
19890187-19890295,19891186-19891320,19891551-19891917,
19892909-19893044,19894924-19894974,19895053-19895134,
19895801-19895853,19895989-19896065,19896234-19896273,
19897666-19897767,19897989-19898031,19898127-19899288,
19899902-19900271
Length = 908
Score = 29.9 bits (64), Expect = 1.4
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +1
Query: 421 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPI 516
FE L E+ G+ KG+ P+PIQ ++P+
Sbjct: 28 FESMGLCEEVYRGVRHKGYRVPTPIQRKAMPL 59
>06_03_0674 +
23422004-23422552,23423295-23423369,23424360-23424443,
23424749-23424991,23425348-23425515,23425608-23425727,
23426372-23427016
Length = 627
Score = 29.9 bits (64), Expect = 1.4
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Frame = +1
Query: 271 SSNHVGNSISQTK-GEVDKSIDDVGWKSKLKIPPKDRRIKTS-DVTDTRGNEFEEFCLKR 444
SS G + K GE+ + + V + ++ D ++ S + + FE L
Sbjct: 34 SSYSAGGGVGGGKVGELAEGLAGVEIGGERRLDKYDIPVEVSGEDVPPPADGFEAAGLVE 93
Query: 445 ELLMGIFEKGWEKPSPIQEASIPIA 519
+L + G+E P+P+Q S+PIA
Sbjct: 94 AVLRNVARCGYESPTPVQRYSMPIA 118
>03_05_0997 +
29565311-29565664,29566134-29566298,29566572-29566661,
29566763-29566891,29568141-29568272,29568904-29568969,
29569326-29569505,29569664-29569693,29569744-29569839,
29569959-29570096,29571060-29571142,29571447-29571484,
29571568-29571788,29572491-29572538
Length = 589
Score = 29.9 bits (64), Expect = 1.4
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +1
Query: 403 DTRGNEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIAPKWKRCTCK 546
+ R F+E L +L + +KG +K +PIQ +IP+ + K K
Sbjct: 79 EEREVSFDELGLDEQLKRALRKKGLDKATPIQREAIPLILEGKDVVAK 126
>06_03_1255 + 28780181-28781172,28782065-28782932
Length = 619
Score = 29.1 bits (62), Expect = 2.4
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 421 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIA 519
F + L +L + KG EKP+PIQ +P+A
Sbjct: 175 FGDLRLPEPILRALRGKGIEKPTPIQVQGLPVA 207
>08_01_0353 -
3107628-3107774,3108177-3108213,3108248-3109164,
3109210-3110952
Length = 947
Score = 28.7 bits (61), Expect = 3.2
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +1
Query: 436 LKRELLMGIFEKGWEKPSPIQEASIPIAPKWKRC 537
L +LL I + G+EKP PIQ ++PI + C
Sbjct: 292 LTSKLLDTIKKLGFEKPMPIQAQALPIIMSGRDC 325
>06_01_1195 +
10280864-10280979,10281024-10281115,10281211-10282156,
10282378-10283075,10283140-10284068
Length = 926
Score = 28.7 bits (61), Expect = 3.2
Identities = 18/58 (31%), Positives = 33/58 (56%)
Frame = -2
Query: 184 LFVQVQH*INSLNHF*TRILVSLSRSPSISE*LDKNLKKVTTLDTQRRHHKSLLNQRQ 11
L +V H IN +N+F R V++S+S +E L +K++ D++ H K L + ++
Sbjct: 225 LVKKVYHSINIVNNFSCRAWVTVSQSFVRTELLRGLIKQLLGGDSENEHFKGLQSMQR 282
>10_03_0002 - 6858257-6861205
Length = 982
Score = 27.5 bits (58), Expect = 7.5
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +1
Query: 247 MMTENRISSSNHVGNSISQTKGEVDKSI 330
++ EN ++ S+HV N ++QTK + S+
Sbjct: 295 LLKENELNQSDHVDNILNQTKTMIAASV 322
>02_05_0021 -
25101738-25101881,25119662-25120331,25122562-25123779,
25123859-25124109
Length = 760
Score = 27.1 bits (57), Expect = 9.9
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
Frame = +1
Query: 250 MTENRISSS---NH-VGNSISQTKGEVDKSIDDVGWKSKLKIPP 369
+T N SSS +H N+ KG++D++ID + W+S IPP
Sbjct: 420 VTYNEASSSRLNDHPTSNAFIAKKGQLDENIDALEWQS--SIPP 461
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,030,581
Number of Sequences: 37544
Number of extensions: 178088
Number of successful extensions: 457
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 457
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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