Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8o02
         (548 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY957503-1|AAY41942.1|  596|Anopheles gambiae vasa-like protein ...    30   0.058
AJ439353-8|CAD27930.1| 1039|Anopheles gambiae putative DNA topoi...    25   2.2  
AY391746-1|AAR28996.1|  502|Anopheles gambiae putative GPCR prot...    24   2.9  
AF230521-1|AAF36974.2|  185|Anopheles gambiae homeobox transcrip...    23   8.8  

>AY957503-1|AAY41942.1|  596|Anopheles gambiae vasa-like protein
           protein.
          Length = 596

 Score = 29.9 bits (64), Expect = 0.058
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +1

Query: 421 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPI 516
           FE   L+ E++  + +  + KP+PIQ  +IPI
Sbjct: 176 FERSGLREEVMTNVRKSSYTKPTPIQRYAIPI 207


>AJ439353-8|CAD27930.1| 1039|Anopheles gambiae putative DNA
           topoisomerase protein.
          Length = 1039

 Score = 24.6 bits (51), Expect = 2.2
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +1

Query: 229 RDKFGKMMTENRISSSN 279
           R K G MMTEN+ S+ N
Sbjct: 224 RKKLGSMMTENKASTFN 240


>AY391746-1|AAR28996.1|  502|Anopheles gambiae putative GPCR
           protein.
          Length = 502

 Score = 24.2 bits (50), Expect = 2.9
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 34  CDVVVEYRVSSPFLNFYLAILKYLV 108
           CD+V EY+  +   NF   IL ++V
Sbjct: 271 CDIVQEYKDQAAMFNFLDFILVFVV 295


>AF230521-1|AAF36974.2|  185|Anopheles gambiae homeobox
           transcription factor protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 8.8
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -1

Query: 488 DGFSHPFSKIPINNSRFKQNSSN 420
           DG+S+P S    N   + QN SN
Sbjct: 127 DGWSYPHSHYSHNQYYYMQNYSN 149


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 449,117
Number of Sequences: 2352
Number of extensions: 6995
Number of successful extensions: 17
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 50881347
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)