Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8o02
         (548 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006605-1|AAK85443.1|  430|Caenorhabditis elegans Conserved ger...   105   3e-23
AC025726-23|AAK73934.1|  763|Caenorhabditis elegans Hypothetical...    36   0.015
AC024844-2|AAK29954.2|  399|Caenorhabditis elegans Hypothetical ...    36   0.015
AF039720-12|AAB96704.1|  399|Caenorhabditis elegans Hypothetical...    36   0.019
Z12116-1|CAA78102.1|  402|Caenorhabditis elegans protein ( C.ele...    35   0.044
U13876-3|AAA21170.1|  402|Caenorhabditis elegans Initiation fact...    35   0.044
Z29115-1|CAA82362.1|  489|Caenorhabditis elegans Hypothetical pr...    33   0.14 
U13876-12|AAA21169.1|  363|Caenorhabditis elegans Hypothetical p...    33   0.18 
AF025451-3|AAB71200.2|  634|Caenorhabditis elegans Hypothetical ...    32   0.31 
AL132948-13|CAD31815.2|  509|Caenorhabditis elegans Hypothetical...    31   0.72 
AF273839-1|AAG15186.1|  470|Caenorhabditis elegans nuclear recep...    31   0.72 
AL034488-3|CAA22456.1|  504|Caenorhabditis elegans Hypothetical ...    29   2.2  
Z75546-3|CAA99891.1|  581|Caenorhabditis elegans Hypothetical pr...    29   2.9  
AL132943-10|CAB81984.1|  266|Caenorhabditis elegans Hypothetical...    28   5.1  
AC025726-6|AAK73923.2|  238|Caenorhabditis elegans Hypothetical ...    28   5.1  
U88181-2|AAB42303.1|  491|Caenorhabditis elegans Dnaj domain (pr...    27   6.7  

>AC006605-1|AAK85443.1|  430|Caenorhabditis elegans Conserved
           germline helicase protein1 protein.
          Length = 430

 Score =  105 bits (251), Expect = 3e-23
 Identities = 46/62 (74%), Positives = 53/62 (85%)
 Frame = +1

Query: 334 DVGWKSKLKIPPKDRRIKTSDVTDTRGNEFEEFCLKRELLMGIFEKGWEKPSPIQEASIP 513
           D  WK+ L +P KDRR KT+DVTDT+G EFE+FCL R+LLMGIFEKGWEKPSPIQEASI 
Sbjct: 16  DENWKAGLNLPAKDRRFKTADVTDTKGVEFEDFCLGRDLLMGIFEKGWEKPSPIQEASIG 75

Query: 514 IA 519
           +A
Sbjct: 76  VA 77


>AC025726-23|AAK73934.1|  763|Caenorhabditis elegans Hypothetical
           protein Y71G12B.8 protein.
          Length = 763

 Score = 36.3 bits (80), Expect = 0.015
 Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = +1

Query: 403 DTRGN-EFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIAPKWKR-CTC 543
           DT  N  FE+  L R++L      G+  P+PIQ+A IP+A   K  C C
Sbjct: 143 DTSVNVSFEQMNLSRQILKACSGAGYSDPTPIQQACIPVALTGKDICAC 191


>AC024844-2|AAK29954.2|  399|Caenorhabditis elegans Hypothetical
           protein Y65B4A.6 protein.
          Length = 399

 Score = 36.3 bits (80), Expect = 0.015
 Identities = 15/31 (48%), Positives = 23/31 (74%)
 Frame = +1

Query: 421 FEEFCLKRELLMGIFEKGWEKPSPIQEASIP 513
           F++  L+ +LL GI+  G+EKPS IQ+ +IP
Sbjct: 28  FDKMGLREDLLRGIYAYGFEKPSAIQQRAIP 58


>AF039720-12|AAB96704.1|  399|Caenorhabditis elegans Hypothetical
           protein F33D11.10 protein.
          Length = 399

 Score = 35.9 bits (79), Expect = 0.019
 Identities = 14/31 (45%), Positives = 23/31 (74%)
 Frame = +1

Query: 421 FEEFCLKRELLMGIFEKGWEKPSPIQEASIP 513
           F++  L+ +LL GI+  G+EKPS IQ+ ++P
Sbjct: 28  FDKMGLREDLLRGIYAYGFEKPSAIQQRAVP 58


>Z12116-1|CAA78102.1|  402|Caenorhabditis elegans protein (
           C.elegans mRNA for eIF-4A homologue. ).
          Length = 402

 Score = 34.7 bits (76), Expect = 0.044
 Identities = 16/30 (53%), Positives = 22/30 (73%)
 Frame = +1

Query: 421 FEEFCLKRELLMGIFEKGWEKPSPIQEASI 510
           F++  LK ELL GI+  G+EKPS IQ+ +I
Sbjct: 31  FDDMELKEELLRGIYGFGFEKPSAIQKRAI 60


>U13876-3|AAA21170.1|  402|Caenorhabditis elegans Initiation factor
           protein 1, isoforma protein.
          Length = 402

 Score = 34.7 bits (76), Expect = 0.044
 Identities = 16/30 (53%), Positives = 22/30 (73%)
 Frame = +1

Query: 421 FEEFCLKRELLMGIFEKGWEKPSPIQEASI 510
           F++  LK ELL GI+  G+EKPS IQ+ +I
Sbjct: 31  FDDMELKEELLRGIYGFGFEKPSAIQKRAI 60


>Z29115-1|CAA82362.1|  489|Caenorhabditis elegans Hypothetical
           protein T26G10.1 protein.
          Length = 489

 Score = 33.1 bits (72), Expect = 0.14
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = +1

Query: 382 IKTSDVTDTRGNEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIAPKWK 531
           I+  D  D +   F E  + + L       GW KPS IQ+A++P A + K
Sbjct: 33  IEKDDEEDVKEKSFAELGVSQPLCDACQRLGWMKPSKIQQAALPHALQGK 82


>U13876-12|AAA21169.1|  363|Caenorhabditis elegans Hypothetical
           protein F57B9.3 protein.
          Length = 363

 Score = 32.7 bits (71), Expect = 0.18
 Identities = 14/25 (56%), Positives = 20/25 (80%)
 Frame = +1

Query: 436 LKRELLMGIFEKGWEKPSPIQEASI 510
           LK ELL GI+  G+EKPS IQ++++
Sbjct: 3   LKEELLRGIYGFGFEKPSAIQKSAV 27


>AF025451-3|AAB71200.2|  634|Caenorhabditis elegans Hypothetical
           protein C24H12.4a protein.
          Length = 634

 Score = 31.9 bits (69), Expect = 0.31
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +1

Query: 421 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIA 519
           F +F L   +L  I E GWEK + +QE+ I +A
Sbjct: 91  FADFGLDERILKSIGELGWEKANQVQESVISLA 123


>AL132948-13|CAD31815.2|  509|Caenorhabditis elegans Hypothetical
           protein Y39B6A.17a protein.
          Length = 509

 Score = 30.7 bits (66), Expect = 0.72
 Identities = 18/76 (23%), Positives = 33/76 (43%)
 Frame = +1

Query: 316 VDKSIDDVGWKSKLKIPPKDRRIKTSDVTDTRGNEFEEFCLKRELLMGIFEKGWEKPSPI 495
           +DK  D++  K  L + P D R    ++ D R    E    +R L    F+  +E    +
Sbjct: 400 IDKPYDELLEKYVLNLHPNDHRKLEKNLADFRKFHMENVVPQRFLADFYFQGTFENEEKL 459

Query: 496 QEASIPIAPKWKRCTC 543
              ++ I  K+++  C
Sbjct: 460 HNLTMEILKKYRKIDC 475


>AF273839-1|AAG15186.1|  470|Caenorhabditis elegans nuclear receptor
           NHR-95 protein.
          Length = 470

 Score = 30.7 bits (66), Expect = 0.72
 Identities = 18/76 (23%), Positives = 33/76 (43%)
 Frame = +1

Query: 316 VDKSIDDVGWKSKLKIPPKDRRIKTSDVTDTRGNEFEEFCLKRELLMGIFEKGWEKPSPI 495
           +DK  D++  K  L + P D R    ++ D R    E    +R L    F+  +E    +
Sbjct: 361 IDKPYDELLEKYVLNLHPNDHRKLEKNLADFRKFHMENVVPQRFLADFYFQGTFENEEKL 420

Query: 496 QEASIPIAPKWKRCTC 543
              ++ I  K+++  C
Sbjct: 421 HNLTMEILKKYRKIDC 436


>AL034488-3|CAA22456.1|  504|Caenorhabditis elegans Hypothetical
           protein Y54G11A.3 protein.
          Length = 504

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +1

Query: 415 NEFEEFCLKRELLMGIFEK-GWEKPSPIQEASIPIAPKWKRC 537
           N FE+       +MG   K G+EKPSPIQ    P+    + C
Sbjct: 83  NSFEQAFGSNASIMGEIRKNGFEKPSPIQSQMWPLLLSGQDC 124


>Z75546-3|CAA99891.1|  581|Caenorhabditis elegans Hypothetical
           protein R05D11.4 protein.
          Length = 581

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
 Frame = +1

Query: 265 ISSSNHVGNSISQTKGEVDKSIDDVGWKSKLKIPPKDRRIKTSDVTDTRGN---EFEEFC 435
           ++S   V +S   ++ EV++++ DV  + +  +    R  +     D   N    F +  
Sbjct: 73  LASRKRVHDSDGDSENEVEETVGDVEKRMQKLLDDIRRTNRIFTWGDHLPNIILRFSDSS 132

Query: 436 LKRELLMGIFEKGWEKPSPIQEASIP 513
           +   LL  + E    +PSPIQ  SIP
Sbjct: 133 MSPSLLNRLSENSIRQPSPIQMQSIP 158


>AL132943-10|CAB81984.1|  266|Caenorhabditis elegans Hypothetical
           protein Y116F11B.14 protein.
          Length = 266

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +1

Query: 427 EFCLKRELLMGIFEKGWEKPSPIQEASIPIAPK 525
           E  LK E+ +G     W +P P+ +  +P  P+
Sbjct: 177 EMMLKEEIEVGRLNSEWNEPLPVGQEVVPSLPR 209


>AC025726-6|AAK73923.2|  238|Caenorhabditis elegans Hypothetical
           protein Y71G12B.22 protein.
          Length = 238

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +1

Query: 427 EFCLKRELLMGIFEKGWEKPSPIQEASIPIAPK 525
           E  LK E+ +G     W +P P+ +  +P  P+
Sbjct: 149 EMMLKEEIEVGRLNSEWNEPLPVGQEVVPSLPR 181


>U88181-2|AAB42303.1|  491|Caenorhabditis elegans Dnaj domain
           (prokaryotic heat shockprotein) protein 7 protein.
          Length = 491

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = +1

Query: 301 QTKGEVDKSIDDVGWKSKLKIPPKDRRIKTSDVTDTRGNEFEEFCLKRELL 453
           + +GE+ K+I D+   SKL     D   +TS +  T G+  E   + RE L
Sbjct: 185 EERGELKKAIHDMRIVSKLSTDSTDTMFETSKLLYTVGDLEESLNVIRECL 235


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,301,348
Number of Sequences: 27780
Number of extensions: 177856
Number of successful extensions: 486
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 486
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)