Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8o01
         (604 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual      27   2.1  
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    26   3.7  
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy...    26   4.9  
SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   4.9  
SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyc...    26   4.9  
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz...    25   6.4  

>SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 614

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 8/22 (36%), Positives = 19/22 (86%)
 Frame = +2

Query: 128 EKKEMHQKRIQTLRKELEYIKS 193
           +K++ +Q++++ L+KE+EY K+
Sbjct: 119 QKQDEYQRKLEELKKEIEYAKT 140


>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1526

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
 Frame = +2

Query: 74   QSLNHVHLGHSIE-----QSKHCEKKEMHQKRIQTLRKELEYIK 190
            QSL HV+L H+IE        + EK +M   ++Q  ++E E  K
Sbjct: 1450 QSLQHVNLAHAIELKALKDQINSEKAKMFSVQVQYEKREQELQK 1493


>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +2

Query: 128 EKKEMHQKRIQTLRKELEYIK 190
           E +E+ +KR+Q +RKE+  +K
Sbjct: 35  ESREIEKKRLQKVRKEISSVK 55


>SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 841

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -2

Query: 465 YFWEIHELLFYYH 427
           YFWEIH +  Y+H
Sbjct: 173 YFWEIHAIPAYHH 185


>SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = -2

Query: 303 MKTFFFYFNNNYLMKIKLMAASFYCANPLSYSN 205
           M+TFF    +N+   + ++ A+ Y ANP ++++
Sbjct: 377 MQTFFSDLVSNHQHYVPIIDAAIYAANPYNHTD 409


>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
           Chs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 926

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = -1

Query: 184 IFKFLSQSLYSFLMHFFLFTVF 119
           +  F+S +L+S +M +F+F VF
Sbjct: 670 VLLFISTALFSIIMIYFVFCVF 691


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,223,981
Number of Sequences: 5004
Number of extensions: 41409
Number of successful extensions: 106
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)