Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8o01
         (604 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0488 - 4070506-4072277,4072455-4072557                           29   2.1  
11_06_0017 - 19288171-19288437,19288770-19288989,19291630-19291754     27   8.7  
06_03_0957 + 26307062-26308987                                         27   8.7  

>05_01_0488 - 4070506-4072277,4072455-4072557
          Length = 624

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/42 (30%), Positives = 25/42 (59%)
 Frame = +2

Query: 86  HVHLGHSIEQSKHCEKKEMHQKRIQTLRKELEYIKSTEWEFE 211
           H + G + E S+H EK+++      +L+K+L+ +KS +   E
Sbjct: 207 HCNFGANSELSEHEEKQQVSDVETSSLQKDLDEVKSEKEALE 248


>11_06_0017 - 19288171-19288437,19288770-19288989,19291630-19291754
          Length = 203

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/53 (26%), Positives = 26/53 (49%)
 Frame = +2

Query: 23  EAETPQVTTQNRIPNFDQSLNHVHLGHSIEQSKHCEKKEMHQKRIQTLRKELE 181
           E ET +   Q      ++SLN   + H I++     +K +H++ +  + KE E
Sbjct: 53  EEETAKRVEQAIRKQVEESLNSEEIKHEIQRRIEVGRKRIHEEVLVQIEKEKE 105


>06_03_0957 + 26307062-26308987
          Length = 641

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +2

Query: 128 EKKEMHQKRIQTLRKELEYIKSTEWEFEYD 217
           E+ ++H  + +TL ++ E+I+  EW F  D
Sbjct: 483 ERPQLHHIKGETLYEKEEFIREMEWGFNTD 512


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,433,813
Number of Sequences: 37544
Number of extensions: 203915
Number of successful extensions: 453
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 453
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)