Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8o01
         (604 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69665-1|CAA93520.5| 1396|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z81127-3|CAB03388.2|  310|Caenorhabditis elegans Hypothetical pr...    28   5.9  
U29082-6|AAL02433.1|  207|Caenorhabditis elegans Hypothetical pr...    27   7.8  
U29082-5|AAA68403.1|  210|Caenorhabditis elegans Hypothetical pr...    27   7.8  
AF133832-1|AAD32265.1|  221|Caenorhabditis elegans NIP3 protein.       27   7.8  
AF080583-1|AAC31574.1|  210|Caenorhabditis elegans Bcl-2/adenovi...    27   7.8  

>Z69665-1|CAA93520.5| 1396|Caenorhabditis elegans Hypothetical
           protein ZK897.1 protein.
          Length = 1396

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = +3

Query: 480 KTGVITCINTSEIVID-DSLYFDAQSCTLDLKFNDQVLYLGY 602
           K G+   I    I  D D  Y D Q  TLD + N+ +  LG+
Sbjct: 756 KHGMDAMIQADSINFDHDHFYSDVQRLTLDFRINEPICSLGW 797


>Z81127-3|CAB03388.2|  310|Caenorhabditis elegans Hypothetical
           protein T22G5.3 protein.
          Length = 310

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
 Frame = -2

Query: 297 TFFFYFNNN----YLMKIKLMAASFYCANPLSYSNSHSVDLIYSSSFLKVC 157
           TF  YF       +L K+K++       N  +Y N +S+ L ++   L++C
Sbjct: 167 TFITYFRLTDKEFHLFKVKILPKKKLTLNFFNYENQNSIQLEFNHDNLEIC 217


>U29082-6|AAL02433.1|  207|Caenorhabditis elegans Hypothetical
           protein C14F5.1b protein.
          Length = 207

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = +2

Query: 104 SIEQSKHCEKKEMHQKRIQTLRKELEYIKSTEWEFEY 214
           SI QS H E + + Q + + +R+ L   K+T+W +++
Sbjct: 91  SIAQSPHVEFESLEQVKYKLVREMLPPGKNTDWIWDW 127


>U29082-5|AAA68403.1|  210|Caenorhabditis elegans Hypothetical
           protein C14F5.1a protein.
          Length = 210

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = +2

Query: 104 SIEQSKHCEKKEMHQKRIQTLRKELEYIKSTEWEFEY 214
           SI QS H E + + Q + + +R+ L   K+T+W +++
Sbjct: 94  SIAQSPHVEFESLEQVKYKLVREMLPPGKNTDWIWDW 130


>AF133832-1|AAD32265.1|  221|Caenorhabditis elegans NIP3 protein.
          Length = 221

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = +2

Query: 104 SIEQSKHCEKKEMHQKRIQTLRKELEYIKSTEWEFEY 214
           SI QS H E + + Q + + +R+ L   K+T+W +++
Sbjct: 105 SIAQSPHVEFESLEQVKYKLVREMLPPGKNTDWIWDW 141


>AF080583-1|AAC31574.1|  210|Caenorhabditis elegans Bcl-2/adenovirus
           E1B 19K-interactingprotein 3 protein.
          Length = 210

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = +2

Query: 104 SIEQSKHCEKKEMHQKRIQTLRKELEYIKSTEWEFEY 214
           SI QS H E + + Q + + +R+ L   K+T+W +++
Sbjct: 94  SIAQSPHVEFESLEQVKYKLVREMLPPGKNTDWIWDW 130


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,052,458
Number of Sequences: 27780
Number of extensions: 226858
Number of successful extensions: 713
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)