Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt8n24
(540 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces p... 27 1.3
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma... 27 1.8
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 25 5.4
SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces po... 25 7.2
SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr 2... 25 7.2
SPBC119.16c |||conserved fungal protein|Schizosaccharomyces pomb... 25 9.5
SPAC222.06 |mak16||nuclear HMG-like acidic protein Mak16|Schizos... 25 9.5
SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual 25 9.5
SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces po... 25 9.5
SPCC1529.01 ||SPCC794.14|membrane transporter|Schizosaccharomyce... 25 9.5
>SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 485
Score = 27.5 bits (58), Expect = 1.3
Identities = 9/28 (32%), Positives = 15/28 (53%)
Frame = +2
Query: 332 WTVPTGWRLPARWSLPSRRSVSPGWSIP 415
W V + +P+RW + ++P W IP
Sbjct: 350 WNVYSKKDIPSRWHYSNNERIAPVWMIP 377
Score = 27.1 bits (57), Expect = 1.8
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Frame = +2
Query: 215 GF-GKTKLEGPTKLREHVSESRRTVPSGRG--VPARWTVPARWTVPTGWRLPARWSLPSR 385
GF G++ L+ V+ SR ++PS V ++ +P+RW R+ W +P
Sbjct: 320 GFRGESDLDDEYIYESLVNYSRSSLPSAENWNVYSKKDIPSRWHYSNNERIAPVWMIP-- 377
Query: 386 RSVSPGWSI 412
GWS+
Sbjct: 378 ---DVGWSL 383
>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 358
Score = 27.1 bits (57), Expect = 1.8
Identities = 18/80 (22%), Positives = 31/80 (38%)
Frame = +2
Query: 221 GKTKLEGPTKLREHVSESRRTVPSGRGVPARWTVPARWTVPTGWRLPARWSLPSRRSVSP 400
G L + L + + P VP ++ + T+PT +P S P+ S+
Sbjct: 76 GSKSLSSSSILSNSTISTSSSTPITASVPTSSSILSNSTIPTTSPVPTTSSTPTSSSILS 135
Query: 401 GWSIPAGRICAPSAWLPTCI 460
+IP+ + S T I
Sbjct: 136 NSTIPSSSSISASTITTTII 155
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 25.4 bits (53), Expect = 5.4
Identities = 10/43 (23%), Positives = 22/43 (51%)
Frame = -2
Query: 449 EARLRGRISALRVCSTRGIRSSWRVSSTLRVTSTLWVRSTLRV 321
EA++R R++ + + RG+ + +++ LWV + V
Sbjct: 853 EAKIRSRVNLIALSLERGLGIIRSLGEAVQLAPALWVEDAIDV 895
>SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 556
Score = 25.0 bits (52), Expect = 7.2
Identities = 12/37 (32%), Positives = 16/37 (43%)
Frame = +2
Query: 209 QNGFGKTKLEGPTKLREHVSESRRTVPSGRGVPARWT 319
+ GF K+ P K R +E R +PS WT
Sbjct: 52 RQGFEKSFPSSPNKKRPRTNEGDRFIPSRDASTELWT 88
>SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 413
Score = 25.0 bits (52), Expect = 7.2
Identities = 9/20 (45%), Positives = 16/20 (80%), Gaps = 1/20 (5%)
Frame = -1
Query: 429 HIRPAG-MLHPGDTLLLEGK 373
+++P G +LHPGD L++ G+
Sbjct: 302 YVQPIGKILHPGDCLIIPGE 321
>SPBC119.16c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 24.6 bits (51), Expect = 9.5
Identities = 19/68 (27%), Positives = 31/68 (45%)
Frame = -1
Query: 366 LAGNLHPVGTVHLAGTVHLAGTPRPEGTVRLDSDTCSRNLVGPSSLVFPKPFC*NSTYNL 187
L +LHP +V LA T L EG + +DT L+ SSL + ++++N
Sbjct: 237 LLSDLHPFYSVGLANTSTLLDNDLEEGWIACTTDTV---LLSKSSLYDLALYWPDNSFNA 293
Query: 186 PMFKLLHN 163
+ + N
Sbjct: 294 NKYPQIFN 301
>SPAC222.06 |mak16||nuclear HMG-like acidic protein
Mak16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 302
Score = 24.6 bits (51), Expect = 9.5
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = +1
Query: 301 RTRKVDRTRKVDRTHRVEVTRKVELTLQEERIPRVEHT 414
R RK D +K + + + E + E+IP V+H+
Sbjct: 264 RKRKTDDAKKSRKKRAPHIHIEYEQERENEKIPAVQHS 301
>SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual
Length = 304
Score = 24.6 bits (51), Expect = 9.5
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +1
Query: 268 RIKADRTLRAGRTRKVDRTRKVDRTHRVEVTRKVE 372
R+K + AGR ++ + R+ R + E RK+E
Sbjct: 39 RLKRQQEWDAGREKRAEMRREKKRLRKEERKRKIE 73
>SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 363
Score = 24.6 bits (51), Expect = 9.5
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -1
Query: 243 GPSSLVFPKPFC*NSTYNLPMFKLLHNELHN 151
GPS +VF P+C +P ++ L + LH+
Sbjct: 49 GPSLVVFYAPWCGYCKKLVPTYQKLASNLHS 79
>SPCC1529.01 ||SPCC794.14|membrane transporter|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 462
Score = 24.6 bits (51), Expect = 9.5
Identities = 15/57 (26%), Positives = 25/57 (43%)
Frame = +1
Query: 328 KVDRTHRVEVTRKVELTLQEERIPRVEHTRRADMRPLSLASNLHMAALVTVNRAISH 498
K + ++ E T K E IPR++ A MRP+ + + L + AI +
Sbjct: 234 KARKLNKSEKTNKYHTEWNLEHIPRLKLVTPALMRPIRMLFTQPIVILCSTYMAIQY 290
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,944,493
Number of Sequences: 5004
Number of extensions: 39292
Number of successful extensions: 92
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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