Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8n09
         (218 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical...    28   0.78 
Z93339-1|CAB07544.1| 2105|Caenorhabditis elegans Hypothetical pr...    26   4.2  
Z70203-7|CAA94110.1| 2105|Caenorhabditis elegans Hypothetical pr...    26   4.2  
AL023825-2|CAA19443.1| 2105|Caenorhabditis elegans Hypothetical ...    26   4.2  
Z81460-5|CAB03832.1|  952|Caenorhabditis elegans Hypothetical pr...    25   7.3  
Z70209-3|CAA94147.1|  952|Caenorhabditis elegans Hypothetical pr...    25   7.3  
U39852-1|AAK39256.2| 2314|Caenorhabditis elegans Hypothetical pr...    25   7.3  
Z77662-4|CAB01193.1|  248|Caenorhabditis elegans Hypothetical pr...    25   9.6  
Z49131-4|CAA88977.2|  263|Caenorhabditis elegans Hypothetical pr...    25   9.6  
U28734-4|AAR30209.1|  477|Caenorhabditis elegans K (potassium) v...    25   9.6  
U28734-3|AAR25654.1|  495|Caenorhabditis elegans K (potassium) v...    25   9.6  
U28734-2|AAB52604.3|  490|Caenorhabditis elegans K (potassium) v...    25   9.6  
AY150829-1|AAN75511.1|  477|Caenorhabditis elegans KVS-2 protein.      25   9.6  
AF541979-1|AAO65852.1|  490|Caenorhabditis elegans KVS-1 protein.      25   9.6  
AC006611-1|AAK85455.2|  348|Caenorhabditis elegans Vacuolar h at...    25   9.6  

>AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical
           protein Y45F10B.10 protein.
          Length = 1592

 Score = 28.3 bits (60), Expect = 0.78
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -1

Query: 83  YHGSSSQL*HNAAGH*ISVVCLCSS 9
           YH +S QL     GH  +V CLCSS
Sbjct: 896 YHIASEQLIGTFKGHTAAVTCLCSS 920


>Z93339-1|CAB07544.1| 2105|Caenorhabditis elegans Hypothetical
           protein Y16B4A.2 protein.
          Length = 2105

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -2

Query: 151 EKVRSWSDVENG*CLASPHGVGATMAAAVN 62
           E V SW+   N   L SPH VG + +   N
Sbjct: 581 ENVHSWNKFANVLYLESPHQVGYSYSTVAN 610


>Z70203-7|CAA94110.1| 2105|Caenorhabditis elegans Hypothetical
           protein Y16B4A.2 protein.
          Length = 2105

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -2

Query: 151 EKVRSWSDVENG*CLASPHGVGATMAAAVN 62
           E V SW+   N   L SPH VG + +   N
Sbjct: 581 ENVHSWNKFANVLYLESPHQVGYSYSTVAN 610


>AL023825-2|CAA19443.1| 2105|Caenorhabditis elegans Hypothetical
           protein Y16B4A.2 protein.
          Length = 2105

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -2

Query: 151 EKVRSWSDVENG*CLASPHGVGATMAAAVN 62
           E V SW+   N   L SPH VG + +   N
Sbjct: 581 ENVHSWNKFANVLYLESPHQVGYSYSTVAN 610


>Z81460-5|CAB03832.1|  952|Caenorhabditis elegans Hypothetical
           protein C04A11.4 protein.
          Length = 952

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 8/23 (34%), Positives = 10/23 (43%)
 Frame = +2

Query: 5   SRCCTSILRKFSGRQHCVTVDCC 73
           + CC     K  G   C + DCC
Sbjct: 402 NHCCNGSTCKLIGEAECASGDCC 424


>Z70209-3|CAA94147.1|  952|Caenorhabditis elegans Hypothetical
           protein C04A11.4 protein.
          Length = 952

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 8/23 (34%), Positives = 10/23 (43%)
 Frame = +2

Query: 5   SRCCTSILRKFSGRQHCVTVDCC 73
           + CC     K  G   C + DCC
Sbjct: 402 NHCCNGSTCKLIGEAECASGDCC 424


>U39852-1|AAK39256.2| 2314|Caenorhabditis elegans Hypothetical
           protein K10C2.1 protein.
          Length = 2314

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -2

Query: 151 EKVRSWSDVENG*CLASPHGVG-ATMAAAVNCDTM 50
           E V SW+   N   L SP GVG +    ++N DT+
Sbjct: 654 ENVYSWNKAANVIFLESPRGVGFSVQDPSLNNDTI 688


>Z77662-4|CAB01193.1|  248|Caenorhabditis elegans Hypothetical
           protein F47B8.4 protein.
          Length = 248

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -3

Query: 216 FFLHRIDKFIKNLNAF 169
           FF+ +++K I NLN F
Sbjct: 86  FFIEKVEKLINNLNPF 101


>Z49131-4|CAA88977.2|  263|Caenorhabditis elegans Hypothetical
           protein ZC373.5 protein.
          Length = 263

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = -3

Query: 105 HHLMAWGLPWQQQSTVTQC 49
           H L  WG  W+    +T+C
Sbjct: 200 HGLFVWGPTWESTKIMTEC 218


>U28734-4|AAR30209.1|  477|Caenorhabditis elegans K (potassium)
           voltage-gated sensorychannel subunit protein 1, isoform
           c protein.
          Length = 477

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -2

Query: 157 KTEKVRSWSDVENG*CLASPHGV 89
           K+E++ +WS VEN   +  PH +
Sbjct: 253 KSERISNWSIVENENIIWEPHPI 275


>U28734-3|AAR25654.1|  495|Caenorhabditis elegans K (potassium)
           voltage-gated sensorychannel subunit protein 1, isoform
           b protein.
          Length = 495

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -2

Query: 157 KTEKVRSWSDVENG*CLASPHGV 89
           K+E++ +WS VEN   +  PH +
Sbjct: 258 KSERISNWSIVENENIIWEPHPI 280


>U28734-2|AAB52604.3|  490|Caenorhabditis elegans K (potassium)
           voltage-gated sensorychannel subunit protein 1, isoform
           a protein.
          Length = 490

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -2

Query: 157 KTEKVRSWSDVENG*CLASPHGV 89
           K+E++ +WS VEN   +  PH +
Sbjct: 253 KSERISNWSIVENENIIWEPHPI 275


>AY150829-1|AAN75511.1|  477|Caenorhabditis elegans KVS-2 protein.
          Length = 477

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -2

Query: 157 KTEKVRSWSDVENG*CLASPHGV 89
           K+E++ +WS VEN   +  PH +
Sbjct: 253 KSERISNWSIVENENIIWEPHPI 275


>AF541979-1|AAO65852.1|  490|Caenorhabditis elegans KVS-1 protein.
          Length = 490

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -2

Query: 157 KTEKVRSWSDVENG*CLASPHGV 89
           K+E++ +WS VEN   +  PH +
Sbjct: 253 KSERISNWSIVENENIIWEPHPI 275


>AC006611-1|AAK85455.2|  348|Caenorhabditis elegans Vacuolar h
           atpase protein 16 protein.
          Length = 348

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 94  HEVMLNITRSRHRSRIGPFLFYLELK 171
           HEV LN+    H+   G F  +++LK
Sbjct: 294 HEVKLNVHSYLHQFHFGVFYAFIKLK 319


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,322,387
Number of Sequences: 27780
Number of extensions: 92673
Number of successful extensions: 175
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 12,740,198
effective HSP length: 52
effective length of database: 11,295,638
effective search space used: 225912760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)