Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt8n08
(531 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 28 0.76
SPBC32H8.09 |||WD repeat protein, human WDR8 family|Schizosaccha... 28 1.00
SPAC1071.09c |||DNAJ domain protein, DNAJC9 family|Schizosacchar... 24 2.6
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 26 4.0
SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine l... 26 4.0
SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr 1|||M... 25 5.3
SPBP18G5.02 |||CDP-diacylglycerol-glycerol-3-phosphate3-phosphat... 25 7.0
SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain p... 25 7.0
SPBC1778.03c |||NADH pyrophosphatase |Schizosaccharomyces pombe|... 25 9.3
SPBC19C7.05 |||cell wall organization protein |Schizosaccharomyc... 25 9.3
>SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 470
Score = 28.3 bits (60), Expect = 0.76
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = -2
Query: 503 TYFCSSIVCSLLYCWSSQ*ETFGQSKCNWFETSVHAIFSNLYNKVY 366
+Y C S + + +CW+ G S N F +H F N+VY
Sbjct: 147 SYICFSSLIRICHCWTYFIRIMGLSSLNKFVNLLHD-FETTSNRVY 191
>SPBC32H8.09 |||WD repeat protein, human WDR8
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 483
Score = 27.9 bits (59), Expect = 1.00
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +1
Query: 397 ACTLVSNQLHLLWPNVSYWELQQ*RRLHTMLLQKY 501
A T+ S ++LW W LQ ++LHT+L+QK+
Sbjct: 333 AATITSKYPNVLW----LWNLQN-KKLHTVLIQKH 362
>SPAC1071.09c |||DNAJ domain protein, DNAJC9
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 282
Score = 23.8 bits (49), Expect(2) = 2.6
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +3
Query: 123 DQFALCMQYQTSENCNSLKQND*KKNSLDPAL 218
++F QY E C+ LK + K S+D L
Sbjct: 130 NEFKASYQYSEEEKCDVLKAYEKGKGSMDVIL 161
Score = 21.0 bits (42), Expect(2) = 2.6
Identities = 9/28 (32%), Positives = 15/28 (53%)
Frame = +3
Query: 336 LTNDPNNTEVINLIVKVAKDGMYTRFEP 419
++++ +VIN +K K Y RF P
Sbjct: 169 ISDEDRFRQVINNAIKDGKISKYKRFAP 196
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 25.8 bits (54), Expect = 4.0
Identities = 10/42 (23%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Frame = +3
Query: 270 YPGCW-EAHNYFKIDKLTALNEALTNDPNNTEVINLIVKVAK 392
+ CW E +++F+ + + ++ ALT+ + E+I +++ +A+
Sbjct: 1172 FVSCWSELYDHFQEELVKSIEIALTSPHISPEIIQILLNLAE 1213
>SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine
ligase |Schizosaccharomyces pombe|chr 2|||Manual
Length = 788
Score = 25.8 bits (54), Expect = 4.0
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 220 AVEFYDTCILEMRFPSTTLVAGKPIIILKS 309
A F DTC ++ + L AGK +II K+
Sbjct: 137 AKSFLDTCTFDVVIKADGLAAGKGVIIPKT 166
>SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr
1|||Manual
Length = 453
Score = 25.4 bits (53), Expect = 5.3
Identities = 10/28 (35%), Positives = 13/28 (46%)
Frame = -2
Query: 422 NWFETSVHAIFSNLYNKVYDFSIVWIIC 339
N+F T H I+ Y Y F + W C
Sbjct: 57 NFFRTLGHYIYVGAYPTRYAFLVFWSFC 84
>SPBP18G5.02 |||CDP-diacylglycerol-glycerol-3-phosphate3-
phosphatidyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.0 bits (52), Expect = 7.0
Identities = 13/50 (26%), Positives = 22/50 (44%)
Frame = -1
Query: 225 YSAMLDLVNFFFSHSVSVNYSSRLFDIAYTMQIDRQLTKHPGL*TVSSLN 76
YS ++N F+S ++ + + + Q KHP L T+ S N
Sbjct: 421 YSLSFSIINIFWSTALKSYIFEKFTNTILGFWLSTQHHKHPFLTTIGSSN 470
>SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 607
Score = 25.0 bits (52), Expect = 7.0
Identities = 10/31 (32%), Positives = 20/31 (64%)
Frame = -1
Query: 234 VEFYSAMLDLVNFFFSHSVSVNYSSRLFDIA 142
+EFY A++ VNF +++ + Y ++ D+A
Sbjct: 223 LEFYQALMGFVNFKLYNTLGLRYPPKI-DVA 252
>SPBC1778.03c |||NADH pyrophosphatase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 376
Score = 24.6 bits (51), Expect = 9.3
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +3
Query: 240 LYTGNEVPKYYPGCWEAHNYFKIDKLTALNE 332
+Y GNE W HN F ID +T ++E
Sbjct: 104 VYMGNEERNGPTDNWSQHNVFAID-ITGIDE 133
>SPBC19C7.05 |||cell wall organization protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 150
Score = 24.6 bits (51), Expect = 9.3
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = -3
Query: 508 VTHISAAALYVASFIVGVPNRRHLAKANA 422
V I AAL FI+G+ NRR K A
Sbjct: 38 VVIICIAALIFFFFIIGIINRRRTKKGQA 66
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,214,776
Number of Sequences: 5004
Number of extensions: 45525
Number of successful extensions: 105
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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