Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt8n08
(531 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0803 + 27829438-27829461,27829558-27829643,27829960-278300... 31 0.58
06_01_0717 - 5219848-5220178,5220268-5220617,5221807-5221982,522... 29 1.8
08_02_1060 + 24007980-24008662,24010078-24010219,24010293-240115... 27 7.1
08_01_0871 + 8502396-8502417,8503606-8503732,8503891-8503990,850... 27 7.1
01_06_0991 + 33634334-33634454,33634656-33634939,33636250-336367... 27 7.1
09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,353... 27 9.4
03_02_0143 - 5888005-5888088,5888818-5888949,5889485-5889634,589... 27 9.4
>03_05_0803 +
27829438-27829461,27829558-27829643,27829960-27830088,
27830806-27830925,27831007-27831132,27831349-27831433,
27831538-27831648,27832215-27832308,27832448-27832728,
27832840-27832947,27833163-27833284,27833825-27834035,
27834149-27834376,27834591-27834680
Length = 604
Score = 31.1 bits (67), Expect = 0.58
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -1
Query: 234 VEFYSAMLDLVNFFFSHSVSVNY 166
+EFY +L +NF HS++VNY
Sbjct: 223 LEFYETLLGFINFKLYHSINVNY 245
>06_01_0717 -
5219848-5220178,5220268-5220617,5221807-5221982,
5222065-5222302,5224492-5224657,5224792-5225159,
5225261-5225436,5227742-5227976,5228242-5228493,
5228513-5228848
Length = 875
Score = 29.5 bits (63), Expect = 1.8
Identities = 14/39 (35%), Positives = 17/39 (43%)
Frame = -2
Query: 461 WSSQ*ETFGQSKCNWFETSVHAIFSNLYNKVYDFSIVWI 345
WS E FG + W T H NL +DF I+ I
Sbjct: 169 WSGNGEAFGDGRGEWLLTVQHRESENLQTYKFDFVILCI 207
>08_02_1060 +
24007980-24008662,24010078-24010219,24010293-24011537,
24012453-24013040
Length = 885
Score = 27.5 bits (58), Expect = 7.1
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Frame = -3
Query: 529 NNNICSEVTHISAAALYVASFIVGVPNRRHLAKANAIGSKR---VYMPSLA 386
NN I S + +++ SF G N ++AN IG+K VY SLA
Sbjct: 634 NNKIPSSLGVADRSSIAARSFNAGYVNENGASEANNIGNKNNTMVYQTSLA 684
>08_01_0871 +
8502396-8502417,8503606-8503732,8503891-8503990,
8504725-8504793,8504870-8505043,8505196-8505373,
8505462-8505594,8505702-8505864,8507031-8507181,
8507266-8507366,8507633-8507788,8508105-8508173,
8508256-8508324,8508403-8508540,8508639-8508767,
8509013-8509053,8510019-8510106,8510199-8510339,
8510428-8510553,8510671-8510736,8510994-8511291,
8511387-8511595,8511689-8511802
Length = 953
Score = 27.5 bits (58), Expect = 7.1
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +3
Query: 222 CRILRYLYTGNEVPKYYPGCWEAHNYFKIDKLTALNEA 335
C I +Y+Y G++ + G W + D++TA++ A
Sbjct: 431 CYIFQYMYPGDDKEECLIGSWFGKKSIEEDRVTAISLA 468
>01_06_0991 +
33634334-33634454,33634656-33634939,33636250-33636795,
33643361-33643966
Length = 518
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -2
Query: 425 CNWFETSVHAIFSNLYNKVYDFSIVWI 345
C F + AI+SNL K DF I++I
Sbjct: 340 CIKFTAKLAAIYSNLKGKAEDFEIIYI 366
>09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,
3536083-3536226,3536974-3537375,3537499-3537721,
3537830-3542368,3542480-3542599,3543005-3543038,
3543922-3544102,3544198-3544815,3545022-3551098,
3551139-3551304,3551508-3551614,3552056-3552178,
3553417-3553642
Length = 5100
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/37 (40%), Positives = 17/37 (45%)
Frame = +3
Query: 309 DKLTALNEALTNDPNNTEVINLIVKVAKDGMYTRFEP 419
D L + NE L N PN+ L V DG Y EP
Sbjct: 3288 DTLHSQNELLANHPNSRIYNTLSCLVEFDGYYLESEP 3324
>03_02_0143 - 5888005-5888088,5888818-5888949,5889485-5889634,
5890540-5890710,5890840-5891007,5891139-5891234,
5891777-5891839,5891949-5892114,5892207-5892274,
5892646-5892789,5893111-5893176,5893329-5893520,
5894567-5894657,5895241-5895329,5895521-5895583,
5895698-5895823,5895902-5895991,5896059-5896181,
5896503-5896619,5896704-5896904,5897643-5897723,
5897897-5897977,5898083-5898184,5898264-5898488,
5898571-5898726,5898798-5899010,5899306-5899455,
5900082-5900204,5900299-5900364,5900555-5900620,
5900686-5900817,5900891-5900965,5901355-5901438,
5901516-5901668,5901741-5901806,5902044-5902205,
5902272-5902388,5902495-5902566,5902702-5902761,
5902869-5902985,5904131-5904430,5904518-5904622,
5905710-5905775,5905853-5906297,5906399-5906567,
5906684-5906736,5906819-5906925
Length = 1981
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +3
Query: 288 AHNYFKIDKLTALNEALTNDPNNTEVINLI 377
+H Y + + A NE L N +EVIN++
Sbjct: 943 SHFYLQYSSVEAYNEMLRRHMNESEVINMV 972
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,523,337
Number of Sequences: 37544
Number of extensions: 263159
Number of successful extensions: 590
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 590
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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