Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8n08
         (531 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41107-2|AAK73880.1|  111|Caenorhabditis elegans Temporarily ass...    30   1.2  
Z66514-4|CAH10807.1|  626|Caenorhabditis elegans Hypothetical pr...    28   3.6  
Z50740-2|CAA90608.1|  383|Caenorhabditis elegans Hypothetical pr...    28   3.6  
Z50044-7|CAA90359.1| 1415|Caenorhabditis elegans Hypothetical pr...    28   3.6  
U64604-2|AAF98624.2| 1093|Caenorhabditis elegans Receptor mediat...    28   3.6  
U37429-3|AAA79350.1|  585|Caenorhabditis elegans Hypothetical pr...    28   3.6  
AY750054-1|AAW73253.1| 1093|Caenorhabditis elegans receptor-medi...    28   3.6  
AL021481-7|CAA16331.3|  629|Caenorhabditis elegans Hypothetical ...    28   3.6  
AF035197-1|AAC17865.1| 1415|Caenorhabditis elegans ZYG-9 protein.      28   3.6  
AC093703-3|AAL00866.2| 1319|Caenorhabditis elegans Hypothetical ...    28   3.6  
Z70205-7|CAA94120.2|  996|Caenorhabditis elegans Hypothetical pr...    27   6.3  
AC006679-7|AAK84463.1|  531|Caenorhabditis elegans Lipid deplete...    27   6.3  
AB054992-1|BAB62002.1|  996|Caenorhabditis elegans peroxin protein.    27   6.3  

>U41107-2|AAK73880.1|  111|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 234 protein.
          Length = 111

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = +2

Query: 437 QMSPIGNSNNKGGYIQCCC-RNMC 505
           Q S  G S NK GY  CCC R++C
Sbjct: 70  QCSSSGCSTNKNGYGTCCCTRDLC 93


>Z66514-4|CAH10807.1|  626|Caenorhabditis elegans Hypothetical
           protein K01A11.5 protein.
          Length = 626

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +3

Query: 276 GCWEAHNYFKIDKLTALNEALTNDPNNTEVINLIVKV 386
           GCW    +FK++    L +A+ +D N  E +NL+  +
Sbjct: 459 GCWR---HFKVNLFKNLRKAVGDDINKPEFVNLLKSI 492


>Z50740-2|CAA90608.1|  383|Caenorhabditis elegans Hypothetical
           protein F31B12.3 protein.
          Length = 383

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
 Frame = +3

Query: 78  STS*LFRVLDAWSVDDQFALCMQYQTSE---NCNSL 176
           STS  F V D W+++D F  C + Q S+    CNS+
Sbjct: 60  STSNFF-VFDYWTIEDNFETCCRNQLSQFTCYCNSI 94


>Z50044-7|CAA90359.1| 1415|Caenorhabditis elegans Hypothetical protein
            F22B5.7 protein.
          Length = 1415

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = -3

Query: 526  NNICSEVTHISAAALYVASFIVGVPNRRHLAKANA 422
            NNI S +  ++  A++  ++++  P +RHL    A
Sbjct: 990  NNISSSLADVAQDAMFQVTYVLNQPEQRHLVDRRA 1024


>U64604-2|AAF98624.2| 1093|Caenorhabditis elegans Receptor mediated
           endocytosis protein6, isoform a protein.
          Length = 1093

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
 Frame = +3

Query: 192 KKNSLDPALRCRILRYLYTGNEVPKYYPGCWEAHNYFKIDKLTALNEALTNDPNN-TEVI 368
           K  +L+P + CR+L+ +     +P Y       H++  +D+L  +   L N+P +  E++
Sbjct: 70  KNQALEPTIACRLLKEISETEALPAYK---HVGHHFSTLDQLLTI---LYNEPQSVAELL 123

Query: 369 NLI 377
           N I
Sbjct: 124 NSI 126


>U37429-3|AAA79350.1|  585|Caenorhabditis elegans Hypothetical
           protein F09E5.10 protein.
          Length = 585

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +3

Query: 276 GCWEAHNYFKIDKLTALNEALTNDPNNTEVINLIVKV 386
           GCW    +FK++    L +A+ +D N  E +NL+  +
Sbjct: 511 GCWR---HFKVNLFKNLRKAVGDDINKPEFVNLLKSI 544


>AY750054-1|AAW73253.1| 1093|Caenorhabditis elegans
           receptor-mediated endocytosis 6 protein.
          Length = 1093

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
 Frame = +3

Query: 192 KKNSLDPALRCRILRYLYTGNEVPKYYPGCWEAHNYFKIDKLTALNEALTNDPNN-TEVI 368
           K  +L+P + CR+L+ +     +P Y       H++  +D+L  +   L N+P +  E++
Sbjct: 70  KNQALEPTIACRLLKEISETEALPAYK---HVGHHFSTLDQLLTI---LYNEPQSVAELL 123

Query: 369 NLI 377
           N I
Sbjct: 124 NSI 126


>AL021481-7|CAA16331.3|  629|Caenorhabditis elegans Hypothetical
           protein Y43F4B.2 protein.
          Length = 629

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +3

Query: 276 GCWEAHNYFKIDKLTALNEALTNDPNNTEVINLIVKV 386
           GCW    +FK++    L +A+ +D N  E +NL+  +
Sbjct: 442 GCWR---HFKVNLFKNLRKAVGDDINKPEFVNLLKSI 475


>AF035197-1|AAC17865.1| 1415|Caenorhabditis elegans ZYG-9 protein.
          Length = 1415

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = -3

Query: 526  NNICSEVTHISAAALYVASFIVGVPNRRHLAKANA 422
            NNI S +  ++  A++  ++++  P +RHL    A
Sbjct: 990  NNISSSLADVAQDAMFQVTYVLNQPEQRHLVDRRA 1024


>AC093703-3|AAL00866.2| 1319|Caenorhabditis elegans Hypothetical
            protein Y20F4.4 protein.
          Length = 1319

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +3

Query: 276  GCWEAHNYFKIDKLTALNEALTNDPNNTEVINLIVKV 386
            GCW    +FK++    L +A+ +D N  E +NL+  +
Sbjct: 982  GCWR---HFKVNLFKNLRKAVGDDINKPEFVNLLKSI 1015


>Z70205-7|CAA94120.2|  996|Caenorhabditis elegans Hypothetical
           protein C11H1.4a protein.
          Length = 996

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = +3

Query: 330 EALTNDPNNTEVINLIVKVAKDGMYTRFEPIAFAL-AKCLLLGTPTIKEATYNAAAEICV 506
           E   + P N+++I+ IVK +    ++  E +A ++  +C + G   I E     A E  V
Sbjct: 652 ETFLDLPENSDIISEIVKKSDGYTFSEIEKLAVSINVECAIKGVKYITEIEVEKAFECFV 711

Query: 507 TSE 515
             +
Sbjct: 712 AGK 714


>AC006679-7|AAK84463.1|  531|Caenorhabditis elegans Lipid depleted
           protein 7 protein.
          Length = 531

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -1

Query: 234 VEFYSAMLDLVNFFFSHSVSVNYSSRLFDIAYTMQIDRQ 118
           VEFY AML  VNF     + + Y  ++  +  T +++ +
Sbjct: 224 VEFYIAMLGFVNFKLYQDIGLFYPPQIGQVVKTDEMETE 262


>AB054992-1|BAB62002.1|  996|Caenorhabditis elegans peroxin protein.
          Length = 996

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = +3

Query: 330 EALTNDPNNTEVINLIVKVAKDGMYTRFEPIAFAL-AKCLLLGTPTIKEATYNAAAEICV 506
           E   + P N+++I+ IVK +    ++  E +A ++  +C + G   I E     A E  V
Sbjct: 652 ETFLDLPENSDIISEIVKKSDGYTFSEIEKLAVSINVECAIKGVKYITEIEVEKAFECFV 711

Query: 507 TSE 515
             +
Sbjct: 712 AGK 714


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,237,547
Number of Sequences: 27780
Number of extensions: 257148
Number of successful extensions: 618
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 618
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1049512662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)