Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8n08
         (531 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    24   0.84 
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    24   0.84 
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   5.9  

>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 24.2 bits (50), Expect = 0.84
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -2

Query: 383 LYNKVYDFSIVWIICQCFIK 324
           L++K + F+   IIC+CF K
Sbjct: 64  LFSKDFRFAFKSIICKCFCK 83


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 24.2 bits (50), Expect = 0.84
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -2

Query: 383 LYNKVYDFSIVWIICQCFIK 324
           L++K + F+   IIC+CF K
Sbjct: 512 LFSKDFRFAFKSIICKCFCK 531


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = +3

Query: 336 LTNDPNNTEVINLIVKVAKDGMYTRFEPIAFALA 437
           +  DP N E   L +K+      TRF+ +   L+
Sbjct: 203 IIGDPANIEFTELCMKLGWKSARTRFDILPLILS 236


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,946
Number of Sequences: 438
Number of extensions: 2961
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14968302
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)