Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8n02
         (623 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    27   2.9  
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    26   3.8  
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   3.8  
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1...    26   5.1  
SPCC830.09c |||RNase P and RNase MRP subunit |Schizosaccharomyce...    25   6.7  
SPAC15A10.05c |mug182||YjeF family protein|Schizosaccharomyces p...    25   8.9  

>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1692

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 13/52 (25%), Positives = 28/52 (53%)
 Frame = +2

Query: 50  SRTDVLNRMCNMCTRDVTLEAPTPPKVSRTLERMKLKHNITTDPVNEEKQRE 205
           S   V+N   N+  + + L   T  K++RT+ ++K+   ++ +PV+    +E
Sbjct: 752 SSLKVVNLSSNILEK-IKLPVATSKKLTRTISQLKIMRTLSGNPVSSLSSQE 802


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = +1

Query: 286 ETTRVEGIRY-SDTDIAAVPRXXXXXXXXXVDEPARLS**RPRLEGAVRGGRG 441
           ++ R++G  Y + +DI +  +            P RL    PR  G  RGGRG
Sbjct: 402 QSGRLKGFGYVTFSDIDSAKKCVEMNGHFIAGRPCRLDFSTPRTGGGSRGGRG 454


>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 860

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -1

Query: 491 GRYRTQASSISELRGEWPRPPRTAPSSRG 405
           G   T  + IS L+ +   PP TAP S G
Sbjct: 52  GASNTSTNQISSLKVDVSSPPSTAPGSAG 80


>SPBC947.11c |elg1||DNA replication factor C complex subunit
           Elg1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 920

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +2

Query: 119 PPKVSRTLERMKLKHNITTDPVNEEKQREVEYQPDLL 229
           PP  S ++ R    H+ T+   NE+   E +++PD++
Sbjct: 365 PP--SSSISRSSTIHSCTSSKRNEDSLSESDFEPDII 399


>SPCC830.09c |||RNase P and RNase MRP subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 139

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 18/52 (34%), Positives = 25/52 (48%)
 Frame = -3

Query: 213 YSTSLCFSSLTGSVVILCFNFIRSKVRDTFGGVGASSVTSRVHILHILFNTS 58
           Y T    SS+T S +      IR+ V + FG VG   V S + + +   NTS
Sbjct: 24  YPTIPSDSSITTSSLS---KIIRTMVAENFGDVGIGKVASSLTVKYFSPNTS 72


>SPAC15A10.05c |mug182||YjeF family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 242

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -3

Query: 168 ILCFNFIRSKVRDTFGGVGASSVTSRVHILHI 73
           I  F+F +  VRD FG + A+ V S++ +L +
Sbjct: 130 IFGFSF-KGPVRDPFGSILAAIVESKIKVLSV 160


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,401,439
Number of Sequences: 5004
Number of extensions: 44992
Number of successful extensions: 125
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)