Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8m23
         (578 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    29   0.49 
SPBC18E5.09c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    28   0.86 
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    28   0.86 
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    27   2.0  
SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat protei...    27   2.6  
SPAC12G12.02 ||SPAC630.01c|rRNA processing protein, unnamed|Schi...    26   3.5  
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce...    26   4.6  
SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element Wtf21|Sc...    25   6.1  
SPCC794.10 |||UTP-glucose-1-phosphate uridylyltransferase |Schiz...    25   6.1  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    25   6.1  
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1...    25   6.1  
SPCC4G3.05c |mus81||Holliday junction resolvase subunit Mus81|Sc...    25   8.0  

>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1588

 Score = 29.1 bits (62), Expect = 0.49
 Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = -1

Query: 404  PQPPP-TGRSRSHRPPDSGRAQTPQKSVSNSGGDTSHSGTLHLYCT 270
            PQPPP  G SRS+R P   + Q        SG  TS  G   +  T
Sbjct: 1320 PQPPPFIGESRSNRKPRPTKRQREIMEQVESGKLTSAEGAAAIAAT 1365


>SPBC18E5.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 128

 Score = 28.3 bits (60), Expect = 0.86
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 180 SLPSYDISFDTDIHTVFGHLFRAVYFRDRCS 272
           S PSYD+SF+   H VF ++ R +     CS
Sbjct: 22  SFPSYDLSFNETEHGVFCYVSRPLTKERSCS 52


>SPCC1739.11c |cdc11||SIN component scaffold protein
           Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 28.3 bits (60), Expect = 0.86
 Identities = 12/39 (30%), Positives = 16/39 (41%)
 Frame = -1

Query: 404 PQPPPTGRSRSHRPPDSGRAQTPQKSVSNSGGDTSHSGT 288
           PQP   G   S  PP +      Q +   S G ++  GT
Sbjct: 16  PQPQEQGSDNSSEPPTTSNVNNTQSTGRGSSGTSTEHGT 54


>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1877

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +1

Query: 34  YQTTNKIIKRNCDVKRVLDLCDVAVTMSRSTRSN 135
           Y   NK++ +N D    + +CD    ++R T SN
Sbjct: 533 YSIQNKMLVKNGDEALTIAICDSRCLIARGTESN 566


>SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 586

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 566 VIGSAMKTPALWMVPTKVLFHSSQARS 486
           + GS      LW +P KVL ++S+ RS
Sbjct: 453 ISGSDTNEVVLWHIPNKVLINASRKRS 479


>SPAC12G12.02 ||SPAC630.01c|rRNA processing protein,
           unnamed|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 183

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 377 RSHRPPDSGRAQTPQKSVSNSGGD 306
           R H+ P SG  + P +  S++GGD
Sbjct: 152 RKHKIPSSGSNRVPVQEKSSTGGD 175


>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 15/33 (45%), Positives = 16/33 (48%)
 Frame = -1

Query: 413 LPGPQPPPTGRSRSHRPPDSGRAQTPQKSVSNS 315
           LP   P PTG S    P DSG   +P   VS S
Sbjct: 283 LPNAYPHPTGISLPFYPFDSGIPVSPNIPVSPS 315


>SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element
           Wtf21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 329

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -1

Query: 407 GPQPPPTGRSRSHRPPDSGRAQTPQKSVSNS 315
           G  PP +  +  + PP++ R   P +S  NS
Sbjct: 40  GALPPYSDHALVNNPPNTHRENNPSRSTDNS 70


>SPCC794.10 |||UTP-glucose-1-phosphate uridylyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 499

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +1

Query: 85  LDLCDVAVTMSRSTRSNELD 144
           LD   VAV++S ST  NELD
Sbjct: 14  LDFDSVAVSISASTMKNELD 33


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -1

Query: 416 KLPGPQPPPTGRSRSHRPPDSGRAQT 339
           K P P PPP+ R+R   P  +G + +
Sbjct: 309 KRPPPPPPPSRRNRGKPPIGNGSSNS 334


>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1004

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 372 RPAPTCWRWLWPRQLSCKRDLDMRLLG 452
           RP+ + W WL   Q +   +LD+ L G
Sbjct: 866 RPSKSLWNWLLGEQSTSAEELDILLGG 892


>SPCC4G3.05c |mus81||Holliday junction resolvase subunit
           Mus81|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 608

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
 Frame = -1

Query: 359 DSGRAQTPQ--KSVSNSGGDTSHSGTLHL-YC 273
           DS   Q P    S++ +G  + H G LH+ YC
Sbjct: 231 DSSLCQPPNFVTSINKAGSSSDHGGELHVTYC 262


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,550,513
Number of Sequences: 5004
Number of extensions: 54947
Number of successful extensions: 160
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)