Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt8m23
(578 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U25032-1|AAB18670.1| 1379|Caenorhabditis elegans par-3 protein. 34 0.084
U00067-5|ABD63219.1| 1340|Caenorhabditis elegans Abnormal embryo... 34 0.084
U00067-4|AAK73874.1| 1376|Caenorhabditis elegans Abnormal embryo... 34 0.084
U00067-3|AAK73875.1| 1379|Caenorhabditis elegans Abnormal embryo... 34 0.084
U37429-5|AAA79347.1| 311|Caenorhabditis elegans Hypothetical pr... 31 0.78
Z70757-4|CAA94800.1| 1208|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z92775-4|CAB07163.4| 501|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z71185-3|CAA94905.2| 427|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z70684-3|CAA94598.1| 233|Caenorhabditis elegans Hypothetical pr... 29 3.2
AL132943-8|CAB81985.3| 453|Caenorhabditis elegans Hypothetical ... 29 3.2
AL132943-7|CAC14394.1| 589|Caenorhabditis elegans Hypothetical ... 29 3.2
AL132895-5|CAC35863.3| 501|Caenorhabditis elegans Hypothetical ... 29 3.2
AF031834-1|AAC13670.1| 589|Caenorhabditis elegans GLY4 protein. 29 3.2
U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protei... 28 4.2
AF038608-17|AAC25822.2| 425|Caenorhabditis elegans Hypothetical... 28 4.2
AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen prot... 28 4.2
Z82257-1|CAB05120.2| 1043|Caenorhabditis elegans Hypothetical pr... 28 5.5
U70855-2|AAB09162.2| 447|Caenorhabditis elegans Tyrosinyl trna ... 28 5.5
AJ271057-1|CAB65957.1| 1043|Caenorhabditis elegans Ack related n... 28 5.5
U29377-2|AAA68713.4| 627|Caenorhabditis elegans Hypothetical pr... 27 7.3
U29377-1|AAZ94294.1| 773|Caenorhabditis elegans Hypothetical pr... 27 7.3
AC084197-15|AAN63425.1| 391|Caenorhabditis elegans Hypothetical... 27 7.3
AC084197-14|AAM44396.1| 526|Caenorhabditis elegans Hypothetical... 27 7.3
AC084197-13|AAM44395.1| 571|Caenorhabditis elegans Hypothetical... 27 7.3
Z81533-8|CAB04332.1| 917|Caenorhabditis elegans Hypothetical pr... 27 9.6
AC024835-3|AAK68538.2| 405|Caenorhabditis elegans Hypothetical ... 27 9.6
>U25032-1|AAB18670.1| 1379|Caenorhabditis elegans par-3 protein.
Length = 1379
Score = 33.9 bits (74), Expect = 0.084
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = -1
Query: 398 PPPTGRSRSHRPPDSGRAQTPQKSVSNSGGDTSHS 294
P P+ R SH PDS + S+SG D+SHS
Sbjct: 778 PSPSSRMSSHTAPDSLLPSPATRGTSSSGADSSHS 812
>U00067-5|ABD63219.1| 1340|Caenorhabditis elegans Abnormal embryonic
partitioningof cytoplasm protein 3, isoform c protein.
Length = 1340
Score = 33.9 bits (74), Expect = 0.084
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = -1
Query: 398 PPPTGRSRSHRPPDSGRAQTPQKSVSNSGGDTSHS 294
P P+ R SH PDS + S+SG D+SHS
Sbjct: 742 PSPSSRMSSHTAPDSLLPSPATRGTSSSGADSSHS 776
>U00067-4|AAK73874.1| 1376|Caenorhabditis elegans Abnormal embryonic
partitioningof cytoplasm protein 3, isoform a protein.
Length = 1376
Score = 33.9 bits (74), Expect = 0.084
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = -1
Query: 398 PPPTGRSRSHRPPDSGRAQTPQKSVSNSGGDTSHS 294
P P+ R SH PDS + S+SG D+SHS
Sbjct: 778 PSPSSRMSSHTAPDSLLPSPATRGTSSSGADSSHS 812
>U00067-3|AAK73875.1| 1379|Caenorhabditis elegans Abnormal embryonic
partitioningof cytoplasm protein 3, isoform b protein.
Length = 1379
Score = 33.9 bits (74), Expect = 0.084
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = -1
Query: 398 PPPTGRSRSHRPPDSGRAQTPQKSVSNSGGDTSHS 294
P P+ R SH PDS + S+SG D+SHS
Sbjct: 778 PSPSSRMSSHTAPDSLLPSPATRGTSSSGADSSHS 812
>U37429-5|AAA79347.1| 311|Caenorhabditis elegans Hypothetical
protein F09E5.7 protein.
Length = 311
Score = 30.7 bits (66), Expect = 0.78
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -3
Query: 486 ELGNNSMISLINPGVACQGLVCMKAAWATATANRSEPV 373
+ GN ++ + I G G+ C KA + TA R+EPV
Sbjct: 168 DFGNETVQNTITTGRKFYGMYCQKANESRTTARRNEPV 205
>Z70757-4|CAA94800.1| 1208|Caenorhabditis elegans Hypothetical
protein ZK287.4 protein.
Length = 1208
Score = 29.1 bits (62), Expect = 2.4
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -1
Query: 407 GPQPPPTGRSRSHRPPDSGRAQTPQKSVSNSGGDTS 300
GP PPP+ S + PDS ++ T + SNSG S
Sbjct: 575 GPIPPPSNSGSSSQAPDSSQSAT---NSSNSGSGES 607
>Z92775-4|CAB07163.4| 501|Caenorhabditis elegans Hypothetical
protein C06H5.6 protein.
Length = 501
Score = 28.7 bits (61), Expect = 3.2
Identities = 17/65 (26%), Positives = 27/65 (41%)
Frame = +1
Query: 109 TMSRSTRSNELDMDAVWGELGQFGRYQVTXXXXXXXXXXXXXXXXXQYIFATGAVQYRCK 288
+MS + LD D V G++GRYQ+ F T +V++ C
Sbjct: 15 SMSATFNYLHLDADKVLTAFGKYGRYQMLAYVITTSVHMLFALNMMIMPFITKSVEFLCD 74
Query: 289 VPECE 303
+P+ E
Sbjct: 75 LPDPE 79
>Z71185-3|CAA94905.2| 427|Caenorhabditis elegans Hypothetical
protein C35A5.4 protein.
Length = 427
Score = 28.7 bits (61), Expect = 3.2
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +3
Query: 459 ERSYYCCRVRSSLRGVEEDFGRNHPQRWCFHG 554
ERSY R+ G+EE G P+++ HG
Sbjct: 178 ERSYEKLRIMLKYTGIEEKSGDGRPKQFILHG 209
>Z70684-3|CAA94598.1| 233|Caenorhabditis elegans Hypothetical
protein F28D1.3 protein.
Length = 233
Score = 28.7 bits (61), Expect = 3.2
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = -2
Query: 319 ILAVTLHILVLYIYTVLHRSRKYTALNKCPKTVW 218
++ +TL +L+L + +RK T NKCP T+W
Sbjct: 3 LIKLTLAVLLLALGA---EARKITIYNKCPFTIW 33
>AL132943-8|CAB81985.3| 453|Caenorhabditis elegans Hypothetical
protein Y116F11B.12b protein.
Length = 453
Score = 28.7 bits (61), Expect = 3.2
Identities = 15/62 (24%), Positives = 31/62 (50%)
Frame = +2
Query: 143 IWTRCGGSWDSSVATKLRYIFRY*YPYCFRAFI*GSIFSRPVQYSIDVKYQNVKCHRQNS 322
+W +CGGS + +++ ++FR +PY F G++F + + + +V K +
Sbjct: 357 VW-QCGGSLEIMPCSRVGHVFRKKHPYTFPGGS-GNVFQKNTRRAAEVWMDEYKAIYLKN 414
Query: 323 TP 328
P
Sbjct: 415 VP 416
>AL132943-7|CAC14394.1| 589|Caenorhabditis elegans Hypothetical
protein Y116F11B.12a protein.
Length = 589
Score = 28.7 bits (61), Expect = 3.2
Identities = 15/62 (24%), Positives = 31/62 (50%)
Frame = +2
Query: 143 IWTRCGGSWDSSVATKLRYIFRY*YPYCFRAFI*GSIFSRPVQYSIDVKYQNVKCHRQNS 322
+W +CGGS + +++ ++FR +PY F G++F + + + +V K +
Sbjct: 357 VW-QCGGSLEIMPCSRVGHVFRKKHPYTFPGGS-GNVFQKNTRRAAEVWMDEYKAIYLKN 414
Query: 323 TP 328
P
Sbjct: 415 VP 416
>AL132895-5|CAC35863.3| 501|Caenorhabditis elegans Hypothetical
protein C06H5.6 protein.
Length = 501
Score = 28.7 bits (61), Expect = 3.2
Identities = 17/65 (26%), Positives = 27/65 (41%)
Frame = +1
Query: 109 TMSRSTRSNELDMDAVWGELGQFGRYQVTXXXXXXXXXXXXXXXXXQYIFATGAVQYRCK 288
+MS + LD D V G++GRYQ+ F T +V++ C
Sbjct: 15 SMSATFNYLHLDADKVLTAFGKYGRYQMLAYVITTSVHMLFALNMMIMPFITKSVEFLCD 74
Query: 289 VPECE 303
+P+ E
Sbjct: 75 LPDPE 79
>AF031834-1|AAC13670.1| 589|Caenorhabditis elegans GLY4 protein.
Length = 589
Score = 28.7 bits (61), Expect = 3.2
Identities = 15/62 (24%), Positives = 31/62 (50%)
Frame = +2
Query: 143 IWTRCGGSWDSSVATKLRYIFRY*YPYCFRAFI*GSIFSRPVQYSIDVKYQNVKCHRQNS 322
+W +CGGS + +++ ++FR +PY F G++F + + + +V K +
Sbjct: 357 VW-QCGGSLEIMPCSRVGHVFRKKHPYTFPGGS-GNVFQKNTRRAAEVWMDEYKAIYLKN 414
Query: 323 TP 328
P
Sbjct: 415 VP 416
>U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protein
43 protein.
Length = 303
Score = 28.3 bits (60), Expect = 4.2
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -1
Query: 413 LPGPQPPPTGRSRSHRPPDSGRAQTPQKSVSNSGGDTSHSG 291
LPGP+ PP + +P G A TP +S + G +G
Sbjct: 186 LPGPRGPPGPPGEAGQPGPQGDAGTPAQSEPLTPGAPGEAG 226
>AF038608-17|AAC25822.2| 425|Caenorhabditis elegans Hypothetical
protein C09G12.9 protein.
Length = 425
Score = 28.3 bits (60), Expect = 4.2
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = -1
Query: 407 GPQPPPTGRSRSHRPPDSGRAQTPQKSVSNSGGDTSHSGTL 285
G P P+ S PP T Q SVS+S G T + T+
Sbjct: 224 GASPYPSASSNPAPPPPRPPPVTAQTSVSSSSGGTIQADTI 264
>AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen
protein.
Length = 303
Score = 28.3 bits (60), Expect = 4.2
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -1
Query: 413 LPGPQPPPTGRSRSHRPPDSGRAQTPQKSVSNSGGDTSHSG 291
LPGP+ PP + +P G A TP +S + G +G
Sbjct: 186 LPGPRGPPGPPGEAGQPGPQGDAGTPAQSEPLTPGAPGEAG 226
>Z82257-1|CAB05120.2| 1043|Caenorhabditis elegans Hypothetical
protein C01C7.1 protein.
Length = 1043
Score = 27.9 bits (59), Expect = 5.5
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -1
Query: 395 PPTGRSRSHRPPDSGRAQTPQKSVSNSGGDTSHSGTLH 282
PP R+ S +PP + + P +SVS+ HS +H
Sbjct: 582 PPVARAPS-QPPSYSQPRPPPRSVSSVSSGNQHSVQVH 618
>U70855-2|AAB09162.2| 447|Caenorhabditis elegans Tyrosinyl trna
synthetase protein1, isoform a protein.
Length = 447
Score = 27.9 bits (59), Expect = 5.5
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = -3
Query: 240 INARKQYGYQYRKIYRNLVATELSQLPPHRVHIQFITTSRTRH 112
+NARKQ + Y + + +L QLPP+ V+ F T+ + H
Sbjct: 30 LNARKQLQHSYPTDLLSKCSEDLRQLPPY-VYAGFDPTAESLH 71
>AJ271057-1|CAB65957.1| 1043|Caenorhabditis elegans Ack related
non-receptor tyrosinekinase protein.
Length = 1043
Score = 27.9 bits (59), Expect = 5.5
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -1
Query: 395 PPTGRSRSHRPPDSGRAQTPQKSVSNSGGDTSHSGTLH 282
PP R+ S +PP + + P +SVS+ HS +H
Sbjct: 582 PPVARAPS-QPPSYSQPRPPPRSVSSVSSGNQHSVQVH 618
>U29377-2|AAA68713.4| 627|Caenorhabditis elegans Hypothetical
protein K05F1.6b protein.
Length = 627
Score = 27.5 bits (58), Expect = 7.3
Identities = 10/26 (38%), Positives = 17/26 (65%), Gaps = 3/26 (11%)
Frame = +1
Query: 439 CDSWVYERD---HTIVAEFDLACEEW 507
C ++ +E+D TIV +F+L C+ W
Sbjct: 99 CQAYHFEKDVMVETIVTDFNLVCDSW 124
>U29377-1|AAZ94294.1| 773|Caenorhabditis elegans Hypothetical
protein K05F1.6a protein.
Length = 773
Score = 27.5 bits (58), Expect = 7.3
Identities = 10/26 (38%), Positives = 17/26 (65%), Gaps = 3/26 (11%)
Frame = +1
Query: 439 CDSWVYERD---HTIVAEFDLACEEW 507
C ++ +E+D TIV +F+L C+ W
Sbjct: 245 CQAYHFEKDVMVETIVTDFNLVCDSW 270
>AC084197-15|AAN63425.1| 391|Caenorhabditis elegans Hypothetical
protein Y73B6BL.5c protein.
Length = 391
Score = 27.5 bits (58), Expect = 7.3
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
Frame = -1
Query: 452 TQESHVKVSFA*KLPGPQPPPTGRS---RSHRPPDSGRAQT-PQKSVSNSG--GDTSHSG 291
++ + +V A P PPP+ S RSH RA + P++S + G D H G
Sbjct: 266 SEGTSTRVESAASAAAPPPPPSSSSSSKRSHEAAARIRAPSPPRRSFGDRGNRSDEHHGG 325
Query: 290 TLHL 279
+ H+
Sbjct: 326 SRHM 329
>AC084197-14|AAM44396.1| 526|Caenorhabditis elegans Hypothetical
protein Y73B6BL.5b protein.
Length = 526
Score = 27.5 bits (58), Expect = 7.3
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
Frame = -1
Query: 452 TQESHVKVSFA*KLPGPQPPPTGRS---RSHRPPDSGRAQT-PQKSVSNSG--GDTSHSG 291
++ + +V A P PPP+ S RSH RA + P++S + G D H G
Sbjct: 401 SEGTSTRVESAASAAAPPPPPSSSSSSKRSHEAAARIRAPSPPRRSFGDRGNRSDEHHGG 460
Query: 290 TLHL 279
+ H+
Sbjct: 461 SRHM 464
>AC084197-13|AAM44395.1| 571|Caenorhabditis elegans Hypothetical
protein Y73B6BL.5a protein.
Length = 571
Score = 27.5 bits (58), Expect = 7.3
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
Frame = -1
Query: 452 TQESHVKVSFA*KLPGPQPPPTGRS---RSHRPPDSGRAQT-PQKSVSNSG--GDTSHSG 291
++ + +V A P PPP+ S RSH RA + P++S + G D H G
Sbjct: 446 SEGTSTRVESAASAAAPPPPPSSSSSSKRSHEAAARIRAPSPPRRSFGDRGNRSDEHHGG 505
Query: 290 TLHL 279
+ H+
Sbjct: 506 SRHM 509
>Z81533-8|CAB04332.1| 917|Caenorhabditis elegans Hypothetical
protein F36G9.13 protein.
Length = 917
Score = 27.1 bits (57), Expect = 9.6
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -1
Query: 416 KLPGPQPPPTGRSRSHRPPDSGRAQTPQKSVSNSGGDTS 300
K+P P PPP + + P++ P K VSN+ D +
Sbjct: 845 KVPPPPPPPVPTAPPAKTPETAPLLVP-KPVSNAENDAA 882
>AC024835-3|AAK68538.2| 405|Caenorhabditis elegans Hypothetical
protein Y57E12B.4 protein.
Length = 405
Score = 27.1 bits (57), Expect = 9.6
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = -1
Query: 395 PPTGRSRSHRPPDSGRAQTPQKSVSNSGGDTSHSGTLHL 279
P TGR R+ P S + +TP + S +T+ S +++
Sbjct: 263 PTTGRDRTTDPVISDKTETPSTNFSTVAENTASSTPIYI 301
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,642,547
Number of Sequences: 27780
Number of extensions: 341756
Number of successful extensions: 1222
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 1099
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1219
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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