Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8m18
         (567 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|c...    40   3e-04
SPCC569.05c |||spermidine family transporter |Schizosaccharomyce...    32   0.051
SPAC7D4.02c |||src |Schizosaccharomyces pombe|chr 1|||Manual           30   0.21 
SPBC36.03c |||spermidine family transporter |Schizosaccharomyces...    29   0.36 
SPBC36.02c |||spermidine family transporter |Schizosaccharomyces...    29   0.63 
SPBC530.15c ||SPBC661.01|spermidine family transporter |Schizosa...    28   1.1  
SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyce...    26   3.4  
SPBC36.01c |||spermidine family transporter |Schizosaccharomyces...    26   3.4  
SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|ch...    26   4.4  

>SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 554

 Score = 39.5 bits (88), Expect = 3e-04
 Identities = 18/47 (38%), Positives = 27/47 (57%)
 Frame = +3

Query: 420 GMISSAMVWGFLSDTLGRRQIMVWGFFCSGLVELTAAMSQNFATLLV 560
           G++  AMVW   +DT+GRR      F  +G+  + A  S NFA++ V
Sbjct: 130 GLLVGAMVWSLSADTIGRRWAFNLTFLFTGVFAVIAGASPNFASICV 176


>SPCC569.05c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 576

 Score = 32.3 bits (70), Expect = 0.051
 Identities = 13/47 (27%), Positives = 29/47 (61%)
 Frame = +3

Query: 420 GMISSAMVWGFLSDTLGRRQIMVWGFFCSGLVELTAAMSQNFATLLV 560
           G I+  +VW  LS+  GR+  ++ G F  G+  ++ A++++  T+++
Sbjct: 182 GYIAGPIVWAPLSELSGRKLPLLIGMFGFGIFNISVAVAKDIQTIMM 228


>SPAC7D4.02c |||src |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 415

 Score = 30.3 bits (65), Expect = 0.21
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 5/35 (14%)
 Frame = -1

Query: 459 PTGSPTPSRTISFLR-----KSWPSQFPYPRETSS 370
           PT SP  S ++SF+        WPSQ+ +P++T S
Sbjct: 232 PTTSPINSTSLSFVDAKKPGSKWPSQYDFPKKTKS 266


>SPBC36.03c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 538

 Score = 29.5 bits (63), Expect = 0.36
 Identities = 10/47 (21%), Positives = 27/47 (57%)
 Frame = +3

Query: 420 GMISSAMVWGFLSDTLGRRQIMVWGFFCSGLVELTAAMSQNFATLLV 560
           G  S  ++W  +S+ +GR+  ++ G F   +  +  A++++  T+++
Sbjct: 145 GFASGPILWAPISELVGRKIPLIVGMFMFSIFSIAVAVAKDVQTVMI 191


>SPBC36.02c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 577

 Score = 28.7 bits (61), Expect = 0.63
 Identities = 17/64 (26%), Positives = 35/64 (54%)
 Frame = +3

Query: 369 MNLSLLDMGTVTAMTYGGMISSAMVWGFLSDTLGRRQIMVWGFFCSGLVELTAAMSQNFA 548
           + +SLL M TV  + Y    S  ++W  LS+  GR+  ++ G    G+  ++ A+ ++  
Sbjct: 170 LTVSLLTM-TVFLLGY---CSGPIIWAPLSELSGRKPPILIGMLGFGIFNISVAVGKDIQ 225

Query: 549 TLLV 560
           T+++
Sbjct: 226 TIMM 229


>SPBC530.15c ||SPBC661.01|spermidine family transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 516

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 11/47 (23%), Positives = 24/47 (51%)
 Frame = +3

Query: 420 GMISSAMVWGFLSDTLGRRQIMVWGFFCSGLVELTAAMSQNFATLLV 560
           G  S  +VW  + +  GRR+ M+   F   +  +  A +++  T+++
Sbjct: 122 GFASGPVVWAPMCELFGRRRPMIIAVFIFCIFHIAVATAKDIQTVMI 168


>SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 583

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 393 GTVTAMTYGGMISSAMVWGFLSDTLGRR 476
           G V A T  G I   +++GFL D  GR+
Sbjct: 86  GVVNAATNIGNIMGQLLFGFLGDFFGRK 113


>SPBC36.01c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 580

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 10/47 (21%), Positives = 23/47 (48%)
 Frame = +3

Query: 420 GMISSAMVWGFLSDTLGRRQIMVWGFFCSGLVELTAAMSQNFATLLV 560
           G     + W  +S+  GR+  +  G F   + ++  A +Q+  T+++
Sbjct: 186 GYCLGPICWAPMSEITGRKTPLYIGLFLFSVFQIAVATAQDIQTIMI 232


>SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 525

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 12/47 (25%), Positives = 25/47 (53%)
 Frame = +3

Query: 420 GMISSAMVWGFLSDTLGRRQIMVWGFFCSGLVELTAAMSQNFATLLV 560
           G+    +  G LSD LGR+ + +          ++ A+++N+A L++
Sbjct: 129 GVALGPLFLGPLSDLLGRKLVYIGSLIIYVCFCISCALARNYAQLVI 175


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,723,266
Number of Sequences: 5004
Number of extensions: 27303
Number of successful extensions: 102
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)