Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt8m18
(567 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0434 + 24252994-24253449,24254791-24254877,24255450-242557... 45 4e-05
09_06_0267 + 21938300-21938371,21938963-21939235,21940665-219412... 39 0.002
04_04_1099 - 30886361-30886591,30886739-30886941,30887030-308875... 36 0.017
11_01_0211 - 1660249-1660352,1660504-1660547,1660893-1660934,166... 31 0.85
01_06_0091 - 26363070-26363361,26363467-26363625,26363708-263638... 30 1.5
10_07_0098 - 12844631-12845074,12845329-12846570 29 2.0
07_03_0968 - 23027940-23028149,23028800-23029002,23029610-230301... 29 2.0
04_04_1680 + 35318330-35318693,35319789-35319877,35320082-353200... 29 2.6
05_03_0569 - 15568538-15570049 29 3.4
04_04_0804 + 28171110-28171176,28171829-28172317,28172384-28173072 28 4.5
07_03_0797 + 21575948-21576042,21576140-21576902,21577134-215773... 28 6.0
01_01_0525 - 3854508-3854924 27 7.9
>03_05_0434 +
24252994-24253449,24254791-24254877,24255450-24255748,
24256146-24256383,24256907-24257441,24257527-24257729,
24258311-24258520
Length = 675
Score = 45.2 bits (102), Expect = 4e-05
Identities = 27/103 (26%), Positives = 52/103 (50%), Gaps = 1/103 (0%)
Frame = +3
Query: 258 GYGKFNLCLMLCSLPXXXXXXXXXXXXXYIFSRAQCDMNLSLLDMGTVTAMTYGGMISSA 437
G+GKF L ++ + ++ + + N+S + ++++ + GM+ A
Sbjct: 209 GFGKFQLLVLAYAGMGWVVESMEIMLLSFVGPLVREEWNISAENESLLSSVVFAGMLIGA 268
Query: 438 MVWGFLSDTLGRRQIMVWG-FFCSGLVELTAAMSQNFATLLVM 563
WGF+SD GRR +++ F SG+ L +A S N++ LL +
Sbjct: 269 SGWGFVSDKYGRRICLLFSTLFASGMGFL-SAFSPNYSCLLAL 310
>09_06_0267 +
21938300-21938371,21938963-21939235,21940665-21941202,
21941288-21941490,21941603-21941827
Length = 436
Score = 39.1 bits (87), Expect = 0.002
Identities = 20/77 (25%), Positives = 34/77 (44%)
Frame = +3
Query: 258 GYGKFNLCLMLCSLPXXXXXXXXXXXXXYIFSRAQCDMNLSLLDMGTVTAMTYGGMISSA 437
G+GKF ++ S ++ Q + LS +T++ + GM+ A
Sbjct: 42 GFGKFQAFVLAYSGMAKISEAMEMMLLSFVGQSVQAEWELSAQAESLITSVVFVGMLVGA 101
Query: 438 MVWGFLSDTLGRRQIMV 488
WG +SD GRRQ ++
Sbjct: 102 YSWGIVSDNYGRRQAVM 118
>04_04_1099 -
30886361-30886591,30886739-30886941,30887030-30887555,
30887751-30887988,30888592-30888695,30888784-30889059,
30889216-30889218
Length = 526
Score = 36.3 bits (80), Expect = 0.017
Identities = 16/76 (21%), Positives = 35/76 (46%)
Frame = +3
Query: 255 TGYGKFNLCLMLCSLPXXXXXXXXXXXXXYIFSRAQCDMNLSLLDMGTVTAMTYGGMISS 434
+G+G++ + ++ + ++ Q + L+ +T++ + GM+
Sbjct: 19 SGFGRYQILILSYAGVGLIAEAMEMMLLSFVGPSVQLEWKLTSHQESMITSIVFVGMLIG 78
Query: 435 AMVWGFLSDTLGRRQI 482
A WG +SD GRRQ+
Sbjct: 79 AYTWGVVSDNYGRRQL 94
>11_01_0211 -
1660249-1660352,1660504-1660547,1660893-1660934,
1661010-1661098,1661181-1661225,1661501-1661545,
1661574-1661681,1661765-1661850,1662253-1662340,
1662884-1663084,1663491-1663566,1663652-1663701,
1663783-1663845,1663924-1663977,1664093-1664195,
1664328-1664430,1664516-1664576,1664872-1664912,
1666605-1666761
Length = 519
Score = 30.7 bits (66), Expect = 0.85
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +3
Query: 393 GTVTAMTYGGMISSAMVWGFLSDTLGRRQIMVWGFF 500
G V A G ++ +WG +D +GR+ ++V+G F
Sbjct: 84 GFVGASFMFGRCLTSTIWGIAADRIGRKPVVVFGIF 119
>01_06_0091 -
26363070-26363361,26363467-26363625,26363708-26363880,
26366639-26366810,26366912-26367294
Length = 392
Score = 29.9 bits (64), Expect = 1.5
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = +3
Query: 39 PHHRLGAPSPAGSRTCAMAVGQDAGAARPAEEIP 140
P H GA GSR+CA AG+A PA +P
Sbjct: 292 PTHYNGADWGEGSRSCAQQTQPVAGSAYPAGPVP 325
>10_07_0098 - 12844631-12845074,12845329-12846570
Length = 561
Score = 29.5 bits (63), Expect = 2.0
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 6/45 (13%)
Frame = +3
Query: 351 SRAQCDMNLSLLDMGTVTAMTYGGMIS------SAMVWGFLSDTL 467
+RA C MNL+L + + +T GG+I+ S+ ++G SDT+
Sbjct: 140 TRATCPMNLALAVVAELDDLTVGGLINGYGIEGSSHLYGLFSDTV 184
>07_03_0968 -
23027940-23028149,23028800-23029002,23029610-23030138,
23030342-23030579,23031121-23031168,23031199-23031494
Length = 507
Score = 29.5 bits (63), Expect = 2.0
Identities = 25/118 (21%), Positives = 50/118 (42%), Gaps = 16/118 (13%)
Frame = +3
Query: 258 GYGKFNLCLMLCSLPXXXXXXXXXXXXXYIFSRAQCDMNLSLLDMGTVTAMTYGGMISSA 437
G+G+F ++ + ++ + + +S G V+++ + GM+ A
Sbjct: 27 GFGRFQALVLAYACVGWVAEAMEVMLLSFVGPSVKAEWGVSGAAEGLVSSVVFAGMLIGA 86
Query: 438 MVWGFLSDTLGRRQIMVW------------GFF----CSGLVELTAAMSQNFATLLVM 563
+ G +SD GR ++ GF +G+ L +A S N+A+LLV+
Sbjct: 87 CLGGLISDRYGRSFLIATLQSKYIYFNFGIGFLSTAVVTGIFGLLSAFSPNYASLLVL 144
>04_04_1680 +
35318330-35318693,35319789-35319877,35320082-35320087,
35320638-35321300
Length = 373
Score = 29.1 bits (62), Expect = 2.6
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = -3
Query: 175 EDKPVTLYRWSWGISSAGRAAPASCPTAIAQVRLPAG 65
E++ + YR SW S + R P C T++ +R G
Sbjct: 96 EEEQIRNYRTSWDSSLSSRYGPFQCTTSVPAMRYTHG 132
>05_03_0569 - 15568538-15570049
Length = 503
Score = 28.7 bits (61), Expect = 3.4
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +2
Query: 431 VRDGVGLPVGHARPAPDHGVGLLLLRPGRAHGRHEPELRHA 553
V++ VG VG+A P + LLL G RH+P R A
Sbjct: 99 VQENVGWGVGYAIPTAGLALSLLLFYVGTPFYRHKPVRRGA 139
>04_04_0804 + 28171110-28171176,28171829-28172317,28172384-28173072
Length = 414
Score = 28.3 bits (60), Expect = 4.5
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = -3
Query: 550 VAKFWLMAAVSSTRPEQKKPHTMIWRRPSVSDRKPHTIADDII 422
V K W AA+++ P P M W SD+ PH + D++
Sbjct: 56 VCKSWCCAAIAAGVPRSCTPWLMSW-----SDKPPHELEYDVL 93
>07_03_0797 +
21575948-21576042,21576140-21576902,21577134-21577327,
21577667-21577700,21578421-21578485,21579032-21579524
Length = 547
Score = 27.9 bits (59), Expect = 6.0
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -3
Query: 511 RPEQKKPHTMIWRRPSVSDRKPHTIA 434
+PEQ++P WR+P V KP +A
Sbjct: 453 KPEQQRPEPETWRKP-VEPPKPEVVA 477
>01_01_0525 - 3854508-3854924
Length = 138
Score = 27.5 bits (58), Expect = 7.9
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +3
Query: 60 PSPAGSRTCAMAVGQDAGAAR 122
PSPA +R C A AGAAR
Sbjct: 13 PSPAAARPCVAASASAAGAAR 33
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,360,572
Number of Sequences: 37544
Number of extensions: 251859
Number of successful extensions: 1217
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1216
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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