Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8m18
         (567 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z22175-2|CAA80131.2|  520|Caenorhabditis elegans Hypothetical pr...    44   8e-05
Z11115-20|CAA77460.2|  520|Caenorhabditis elegans Hypothetical p...    44   8e-05
Z68219-5|CAJ43449.1|  343|Caenorhabditis elegans Hypothetical pr...    34   0.082
Z68219-4|CAA92482.2|  359|Caenorhabditis elegans Hypothetical pr...    34   0.082
U28737-2|AAA68272.1|  455|Caenorhabditis elegans Patterned expre...    31   0.44 
U00031-5|AAP68960.1|  534|Caenorhabditis elegans Hypothetical pr...    31   0.58 
U13071-4|AAA20671.1|  510|Caenorhabditis elegans Hypothetical pr...    29   1.8  
Z99281-14|CAB16524.1|  532|Caenorhabditis elegans Hypothetical p...    29   2.3  
Z92775-4|CAB07163.4|  501|Caenorhabditis elegans Hypothetical pr...    29   2.3  
Z77132-6|CAB00861.3| 1406|Caenorhabditis elegans Hypothetical pr...    29   2.3  
AL132895-5|CAC35863.3|  501|Caenorhabditis elegans Hypothetical ...    29   2.3  
AJ276018-1|CAC81666.1| 1122|Caenorhabditis elegans putative TRP ...    29   2.3  
Z47810-7|CAH10843.1|  538|Caenorhabditis elegans Hypothetical pr...    27   7.1  
Z47810-6|CAB76718.1|  504|Caenorhabditis elegans Hypothetical pr...    27   7.1  
U41992-8|AAA83359.1|  754|Caenorhabditis elegans Hypothetical pr...    27   7.1  
AL031264-3|CAH04705.1|  538|Caenorhabditis elegans Hypothetical ...    27   7.1  
AL031264-2|CAB76735.1|  504|Caenorhabditis elegans Hypothetical ...    27   7.1  
Z73906-13|CAA98118.1|  162|Caenorhabditis elegans Hypothetical p...    27   9.4  
AY594301-1|AAT92095.1|  162|Caenorhabditis elegans mitochondrial...    27   9.4  

>Z22175-2|CAA80131.2|  520|Caenorhabditis elegans Hypothetical
           protein ZK637.1 protein.
          Length = 520

 Score = 44.0 bits (99), Expect = 8e-05
 Identities = 24/100 (24%), Positives = 44/100 (44%)
 Frame = +3

Query: 258 GYGKFNLCLMLCSLPXXXXXXXXXXXXXYIFSRAQCDMNLSLLDMGTVTAMTYGGMISSA 437
           G+G+F L L + +                I     C+  +S +    VT   + GM+ S+
Sbjct: 77  GFGRFQLKLSILTGMAWMADAMEMMLLSLISPALACEWGISSVQQALVTTCVFSGMMLSS 136

Query: 438 MVWGFLSDTLGRRQIMVWGFFCSGLVELTAAMSQNFATLL 557
             WG + D  GRR+ + +    + ++ + + MS +F  LL
Sbjct: 137 TFWGKICDRFGRRKGLTFSTLVACIMGVISGMSPHFYVLL 176


>Z11115-20|CAA77460.2|  520|Caenorhabditis elegans Hypothetical
           protein ZK637.1 protein.
          Length = 520

 Score = 44.0 bits (99), Expect = 8e-05
 Identities = 24/100 (24%), Positives = 44/100 (44%)
 Frame = +3

Query: 258 GYGKFNLCLMLCSLPXXXXXXXXXXXXXYIFSRAQCDMNLSLLDMGTVTAMTYGGMISSA 437
           G+G+F L L + +                I     C+  +S +    VT   + GM+ S+
Sbjct: 77  GFGRFQLKLSILTGMAWMADAMEMMLLSLISPALACEWGISSVQQALVTTCVFSGMMLSS 136

Query: 438 MVWGFLSDTLGRRQIMVWGFFCSGLVELTAAMSQNFATLL 557
             WG + D  GRR+ + +    + ++ + + MS +F  LL
Sbjct: 137 TFWGKICDRFGRRKGLTFSTLVACIMGVISGMSPHFYVLL 176


>Z68219-5|CAJ43449.1|  343|Caenorhabditis elegans Hypothetical
           protein T05A1.5b protein.
          Length = 343

 Score = 33.9 bits (74), Expect = 0.082
 Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
 Frame = +3

Query: 348 FSRAQCDMNLS--LLDMGTVTAMTYG-GMISSAMVWGFLSDTLGRRQIMVWGFFCSGLVE 518
           F   Q + N++  L+D G +T+  +  G      ++   +D +GRR +++   F SGL  
Sbjct: 104 FVTVQNEFNITKTLIDPGEMTSSIFFLGNGILGQIYAVAADRIGRRPVLIASLFISGLSG 163

Query: 519 LTAAMSQNFATLLV 560
           + AA +  F  +L+
Sbjct: 164 IGAAYAPTFEIMLI 177


>Z68219-4|CAA92482.2|  359|Caenorhabditis elegans Hypothetical
           protein T05A1.5a protein.
          Length = 359

 Score = 33.9 bits (74), Expect = 0.082
 Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
 Frame = +3

Query: 348 FSRAQCDMNLS--LLDMGTVTAMTYG-GMISSAMVWGFLSDTLGRRQIMVWGFFCSGLVE 518
           F   Q + N++  L+D G +T+  +  G      ++   +D +GRR +++   F SGL  
Sbjct: 120 FVTVQNEFNITKTLIDPGEMTSSIFFLGNGILGQIYAVAADRIGRRPVLIASLFISGLSG 179

Query: 519 LTAAMSQNFATLLV 560
           + AA +  F  +L+
Sbjct: 180 IGAAYAPTFEIMLI 193


>U28737-2|AAA68272.1|  455|Caenorhabditis elegans Patterned
           expression site protein23 protein.
          Length = 455

 Score = 31.5 bits (68), Expect = 0.44
 Identities = 14/52 (26%), Positives = 30/52 (57%)
 Frame = +3

Query: 366 DMNLSLLDMGTVTAMTYGGMISSAMVWGFLSDTLGRRQIMVWGFFCSGLVEL 521
           D N+S+L    V A+   G+   ++++G++SD  GR+++  +    S ++ L
Sbjct: 73  DTNVSVLWWENVIAIQQVGIFVGSILFGYISDHFGRQKVCQYSLLISSVILL 124


>U00031-5|AAP68960.1|  534|Caenorhabditis elegans Hypothetical
           protein B0361.11 protein.
          Length = 534

 Score = 31.1 bits (67), Expect = 0.58
 Identities = 17/55 (30%), Positives = 29/55 (52%)
 Frame = +3

Query: 399 VTAMTYGGMISSAMVWGFLSDTLGRRQIMVWGFFCSGLVELTAAMSQNFATLLVM 563
           +T  T G +I+   +   L+D  GR+ I+V     + L  + A+ S NFA  L++
Sbjct: 150 LTIFTIGAVIAVPFM-SMLADRYGRKPIIVTTAILAFLANMAASFSPNFAIFLIL 203


>U13071-4|AAA20671.1|  510|Caenorhabditis elegans Hypothetical
           protein T22F7.1 protein.
          Length = 510

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 14/53 (26%), Positives = 29/53 (54%)
 Frame = +3

Query: 402 TAMTYGGMISSAMVWGFLSDTLGRRQIMVWGFFCSGLVELTAAMSQNFATLLV 560
           T++ + G +    ++  ++D  GRR I++     +G+V    +++ NF  LLV
Sbjct: 133 TSIYFLGNLLIGQLFAVVADRFGRRPIIIICLLLTGIVGSLGSLAPNFPLLLV 185


>Z99281-14|CAB16524.1|  532|Caenorhabditis elegans Hypothetical
           protein Y57G11C.23 protein.
          Length = 532

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = +3

Query: 411 TYGGMISSAMVWGFLSDTLGRRQIMVWGFFCS-GLVELTAAMS 536
           T+ G +   ++ G+LSDT+GRR + ++        V L+AA++
Sbjct: 113 TFLGTLVGNLILGYLSDTIGRRPVYIFSILLGVPSVILSAALN 155


>Z92775-4|CAB07163.4|  501|Caenorhabditis elegans Hypothetical
           protein C06H5.6 protein.
          Length = 501

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 18/48 (37%), Positives = 24/48 (50%)
 Frame = +3

Query: 417 GGMISSAMVWGFLSDTLGRRQIMVWGFFCSGLVELTAAMSQNFATLLV 560
           GGMI S  V   LSD LGRR + +   + S    L  A + N+   L+
Sbjct: 149 GGMIVSPFV-SQLSDILGRRPLFLIPLYISVAANLICAAAPNYLIFLL 195


>Z77132-6|CAB00861.3| 1406|Caenorhabditis elegans Hypothetical
           protein F54D1.5 protein.
          Length = 1406

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -1

Query: 447 PTPSRTISFLRKSWPSQFPYPRETSSCRTA 358
           P  S+T   L +  P Q PYPRE+ +  T+
Sbjct: 799 PKHSKTARLLSEETPEQLPYPRESITSTTS 828


>AL132895-5|CAC35863.3|  501|Caenorhabditis elegans Hypothetical
           protein C06H5.6 protein.
          Length = 501

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 18/48 (37%), Positives = 24/48 (50%)
 Frame = +3

Query: 417 GGMISSAMVWGFLSDTLGRRQIMVWGFFCSGLVELTAAMSQNFATLLV 560
           GGMI S  V   LSD LGRR + +   + S    L  A + N+   L+
Sbjct: 149 GGMIVSPFV-SQLSDILGRRPLFLIPLYISVAANLICAAAPNYLIFLL 195


>AJ276018-1|CAC81666.1| 1122|Caenorhabditis elegans putative TRP
           homologous cationchannel protein.
          Length = 1122

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -1

Query: 447 PTPSRTISFLRKSWPSQFPYPRETSSCRTA 358
           P  S+T   L +  P Q PYPRE+ +  T+
Sbjct: 515 PKHSKTARLLSEETPEQLPYPRESITSTTS 544


>Z47810-7|CAH10843.1|  538|Caenorhabditis elegans Hypothetical
           protein F45E10.2b protein.
          Length = 538

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = +3

Query: 396 TVTAMTYGGMISSAMVWGFLSDTLGRRQIMVW 491
           TV A+ + G +  +   G ++D +GR++++ W
Sbjct: 148 TVQAVYFIGQMIGSFTCGVMADKIGRKKVLFW 179


>Z47810-6|CAB76718.1|  504|Caenorhabditis elegans Hypothetical
           protein F45E10.2a protein.
          Length = 504

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = +3

Query: 396 TVTAMTYGGMISSAMVWGFLSDTLGRRQIMVW 491
           TV A+ + G +  +   G ++D +GR++++ W
Sbjct: 114 TVQAVYFIGQMIGSFTCGVMADKIGRKKVLFW 145


>U41992-8|AAA83359.1|  754|Caenorhabditis elegans Hypothetical
           protein F32E10.1 protein.
          Length = 754

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = -3

Query: 475 RRPSVSDRKPHTIADDIIPP*VMAVTVPISKRDK 374
           R  + SDRK   + DD +P     +T  ISKRDK
Sbjct: 672 RATARSDRKTKKVNDDDVPFGGREMTFTISKRDK 705


>AL031264-3|CAH04705.1|  538|Caenorhabditis elegans Hypothetical
           protein F45E10.2b protein.
          Length = 538

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = +3

Query: 396 TVTAMTYGGMISSAMVWGFLSDTLGRRQIMVW 491
           TV A+ + G +  +   G ++D +GR++++ W
Sbjct: 148 TVQAVYFIGQMIGSFTCGVMADKIGRKKVLFW 179


>AL031264-2|CAB76735.1|  504|Caenorhabditis elegans Hypothetical
           protein F45E10.2a protein.
          Length = 504

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = +3

Query: 396 TVTAMTYGGMISSAMVWGFLSDTLGRRQIMVW 491
           TV A+ + G +  +   G ++D +GR++++ W
Sbjct: 114 TVQAVYFIGQMIGSFTCGVMADKIGRKKVLFW 145


>Z73906-13|CAA98118.1|  162|Caenorhabditis elegans Hypothetical
           protein D2030.5 protein.
          Length = 162

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 410 DLRRNDIVRDGVGLPVGHARPAPDHGV 490
           DL+++     G+G  V  A P P+HGV
Sbjct: 44  DLKKSSEFYKGLGAKVSEAVPQPEHGV 70


>AY594301-1|AAT92095.1|  162|Caenorhabditis elegans mitochondrial
           methylmalonyl-CoAepimerase protein.
          Length = 162

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 410 DLRRNDIVRDGVGLPVGHARPAPDHGV 490
           DL+++     G+G  V  A P P+HGV
Sbjct: 44  DLKKSSEFYKGLGAKVSEAVPQPEHGV 70


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,017,444
Number of Sequences: 27780
Number of extensions: 173891
Number of successful extensions: 641
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)