Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt8m17
(615 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPACUNK4.06c |rpb7|SPAPYUK71.02|DNA-directed RNA polymerase comp... 180 2e-46
SPBC2G5.07c |rpc25||DNA-directed RNA polymerase III complex subu... 53 4e-08
SPBC3B9.07c |rpa43|rpa21|DNA-directed RNA polymerase I complex s... 27 1.6
SPAC23C11.11 |cka1|orb5|serine/threonine protein kinase Cka1|Sch... 27 2.2
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 27 2.2
SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|c... 27 2.8
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R... 27 2.8
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 25 6.6
SPCC1753.02c |git3||G-protein coupled receptor Git3|Schizosaccha... 25 6.6
SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual 25 6.6
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho... 25 8.7
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 25 8.7
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 25 8.7
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch... 25 8.7
SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomy... 25 8.7
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|... 25 8.7
>SPACUNK4.06c |rpb7|SPAPYUK71.02|DNA-directed RNA polymerase complex
II subunit Rpb7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 172
Score = 180 bits (437), Expect = 2e-46
Identities = 88/169 (52%), Positives = 115/169 (68%), Gaps = 2/169 (1%)
Frame = +2
Query: 113 FYHISLEHEILLHPKYFGPQLLETVKQKLYTDVEGTCTGKYGFVIAVTQID--NIGAGLI 286
F+ L I LHP YFGP++ + +K KL DVEGTC+G+YG++I V + +I G +
Sbjct: 3 FFLKELSLTISLHPSYFGPRMQDYLKAKLLADVEGTCSGQYGYIICVLDSNTIDIDKGRV 62
Query: 287 QHGQGFVMYPVKYKAVVFRPFKGEVLDGIVTQVNKVGMFAQIGPLKCFISHHSIPDYMEF 466
GQGF + VKY+AV++RPF+GEV+D IVT VNK+G FA IGPL F+S H +P M+F
Sbjct: 63 VPGQGFAEFEVKYRAVLWRPFRGEVVDAIVTTVNKMGFFANIGPLNVFVSSHLVPPDMKF 122
Query: 467 CPNVNPPCYKSKQEDSVIQEEDVIRLKIVGTRVDASGIFAIGTLIGDYL 613
P NPP Y ED VI++ +RLKIVGTR DA+ IFAI T+ DYL
Sbjct: 123 DPTANPPNYSG--EDQVIEKGSNVRLKIVGTRTDATEIFAIATMKEDYL 169
>SPBC2G5.07c |rpc25||DNA-directed RNA polymerase III complex subunit
Rpc25|Schizosaccharomyces pombe|chr 2|||Manual
Length = 203
Score = 52.8 bits (121), Expect = 4e-08
Identities = 33/116 (28%), Positives = 52/116 (44%)
Frame = +2
Query: 140 ILLHPKYFGPQLLETVKQKLYTDVEGTCTGKYGFVIAVTQIDNIGAGLIQHGQGFVMYPV 319
I +HP F E + ++++ G I V IG G+I++G G V
Sbjct: 11 ISIHPSNFWKPTKEALAEEIHKKYANKVIQNIGLAICVYDFLKIGEGIIKYGDGSSYMNV 70
Query: 320 KYKAVVFRPFKGEVLDGIVTQVNKVGMFAQIGPLKCFISHHSIPDYMEFCPNVNPP 487
++ ++FRPF+GEV+ G + ++ G+ I F IP M F P V P
Sbjct: 71 VFRLIIFRPFRGEVMLGKIKSCSEEGIRVTIS----FFDDIFIPKDMLFDPCVFRP 122
>SPBC3B9.07c |rpa43|rpa21|DNA-directed RNA polymerase I complex
subunit Rpa43|Schizosaccharomyces pombe|chr 2|||Manual
Length = 173
Score = 27.5 bits (58), Expect = 1.6
Identities = 29/126 (23%), Positives = 55/126 (43%), Gaps = 5/126 (3%)
Frame = +2
Query: 236 GFVIAVTQIDNIG-AGLIQHGQGFVMYPVKYKAVVFRPFKGEVLDGIVTQV--NKVGMFA 406
G V+A I + + + + F V+ +VF P KG+ L+G + V + +G+
Sbjct: 46 GIVLAYDNIRFLEKSAKVMYDSPFSFIWVRVDVLVFSPKKGDCLEGKINLVSPSHIGLLI 105
Query: 407 QIGPLKCFISHHSIP-DYMEFCPNVNPPCYKSKQED-SVIQEEDVIRLKIVGTRVDASGI 580
+G I SIP D++ P+ + K D ++++ + + G + +A
Sbjct: 106 -LGIFNASIPRKSIPKDWIFIEPDTTEEQGRWKTNDGNILEPGKDLEFVVDGIQREAGLT 164
Query: 581 FAIGTL 598
GTL
Sbjct: 165 MVQGTL 170
>SPAC23C11.11 |cka1|orb5|serine/threonine protein kinase
Cka1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 332
Score = 27.1 bits (57), Expect = 2.2
Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +2
Query: 113 FYHISLEHEILLHPKYF-GPQLLETVKQKLYT 205
FYH +E+ + + +YF GP+LL ++ Y+
Sbjct: 185 FYHAGMEYNVRVASRYFKGPELLVDFREYDYS 216
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 27.1 bits (57), Expect = 2.2
Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
Frame = -1
Query: 375 TIPSKTSPLNGLNTTALY--LTGYMTNPCPCCMRPAPI--LSI*VTAMTNPYLPVQVPST 208
T P TSP N NT + L +P + P P L V++ ++PY ST
Sbjct: 136 TDPFLTSPGNKQNTVDSFRPLPETPVSPGGSLVHPLPRPPLPSSVSSHSSPYSTTS--ST 193
Query: 207 SVYSFCLTVSNSCGPK 160
S+YS +S SC P+
Sbjct: 194 SLYSLYNDISLSCSPE 209
>SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 865
Score = 26.6 bits (56), Expect = 2.8
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = -2
Query: 602 QLKSRLQKCHSRQPSYQQSLIGSHPLLVLRYPLVYSYN 489
Q+ R+++ + R P+YQQS+ S LL++ P N
Sbjct: 176 QIVMRIRQRYYRSPTYQQSM-SSRSLLIMDIPTTMRSN 212
>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
Rec11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 923
Score = 26.6 bits (56), Expect = 2.8
Identities = 11/42 (26%), Positives = 20/42 (47%)
Frame = -1
Query: 222 QVPSTSVYSFCLTVSNSCGPKYFGCNKISCSNEMW*NIFQRW 97
Q+ + +S +S P YF + + E+W N+F+ W
Sbjct: 856 QIETFKAWSMKFKEKSSGNPSYFFSPEDTEEKELWNNLFEDW 897
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 25.4 bits (53), Expect = 6.6
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +1
Query: 82 LIVICPPLKNVLPHFIGARNFVTSEIFRS 168
LI+ PL+N LP NFV +IF S
Sbjct: 1022 LILTGTPLQNNLPELWALLNFVLPKIFNS 1050
>SPCC1753.02c |git3||G-protein coupled receptor
Git3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 466
Score = 25.4 bits (53), Expect = 6.6
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +1
Query: 232 IWICHRGNSNRQYRSWSHTTWTRV 303
IWIC+RG + + R S + W ++
Sbjct: 427 IWICYRGYTYLKERDSSKSYWDQI 450
>SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual
Length = 554
Score = 25.4 bits (53), Expect = 6.6
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -2
Query: 509 PLVYSYNMEDLH*DRTPYSLVLND 438
P +YSYN++ L D Y +VL +
Sbjct: 145 PQIYSYNLKVLEDDPVDYRIVLRE 168
>SPBC3E7.01 |fab1|ste12,
SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1932
Score = 25.0 bits (52), Expect = 8.7
Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Frame = +2
Query: 323 YKAVVFRPFKGEVLDGIVTQVNKVGMFAQIGPLKCFISHH-----SIPDYME-FCPNVNP 484
+ ++F PF + + + + +NK IGP +C + + ++ Y+E C N N
Sbjct: 911 HSKLMFSPFSSQRIILLYSIINKETSVPCIGPERCLLEFYRETDCTLGQYIEDSCLNTNV 970
Query: 485 PC 490
C
Sbjct: 971 SC 972
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 25.0 bits (52), Expect = 8.7
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -2
Query: 185 LSPIVVDRNISDVTKFRAPMKCGRTFF 105
L P +R+ S T F +PMK +FF
Sbjct: 223 LLPSAKNRSFSSFTSFESPMKYDDSFF 249
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 25.0 bits (52), Expect = 8.7
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -3
Query: 268 IVYLSYRDDKSIFASTGAFHI 206
I + S RDD I+A +G F+I
Sbjct: 93 ISFTSIRDDSVIYAQSGTFYI 113
>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 845
Score = 25.0 bits (52), Expect = 8.7
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = -1
Query: 267 LSI*VTAMTNPYLPVQVPSTSVYSFCLTVSNSCG-PKYFGCNKI 139
L+I TA+ + +LP+++ T+ S+ +SC P F NK+
Sbjct: 472 LTIPHTAINDSWLPMKLKETNAISYYRKTCSSCKYPFQFFINKL 515
>SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 541
Score = 25.0 bits (52), Expect = 8.7
Identities = 12/33 (36%), Positives = 13/33 (39%)
Frame = +2
Query: 344 PFKGEVLDGIVTQVNKVGMFAQIGPLKCFISHH 442
PF G LD + K Q GPL C H
Sbjct: 60 PFMGSFLDSMKPTFEKYNAKWQTGPLSCVSVFH 92
>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
Snf21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1199
Score = 25.0 bits (52), Expect = 8.7
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +1
Query: 82 LIVICPPLKNVLPHFIGARNFVTSEIFRS 168
LI+ PL+N LP NFV IF S
Sbjct: 570 LILTGTPLQNNLPELWALLNFVLPRIFNS 598
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,728,245
Number of Sequences: 5004
Number of extensions: 61649
Number of successful extensions: 180
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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