Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt8m17
(615 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0244 - 19344418-19344483,19344961-19345029,19345355-193454... 199 1e-51
05_01_0416 + 3283403-3283930 79 4e-15
05_03_0030 + 7529814-7530257,7530409-7530462,7531605-7532793,753... 64 1e-10
07_03_0362 - 17217515-17217604,17217690-17217779,17217866-172179... 55 4e-08
09_04_0109 - 14674980-14675004,14675861-14676468 29 2.9
01_01_0471 - 3467275-3467351,3467526-3467895,3468258-3468555,346... 28 5.1
05_06_0118 + 25735966-25737601,25737698-25738488 27 8.9
05_04_0299 - 19958776-19958858,19958883-19959012,19960131-199601... 27 8.9
03_06_0701 - 35620559-35620777,35620872-35620949,35621038-356211... 27 8.9
>05_04_0244 -
19344418-19344483,19344961-19345029,19345355-19345420,
19345735-19345785,19345892-19346057,19346148-19346263
Length = 177
Score = 199 bits (486), Expect = 1e-51
Identities = 88/168 (52%), Positives = 126/168 (75%)
Frame = +2
Query: 110 MFYHISLEHEILLHPKYFGPQLLETVKQKLYTDVEGTCTGKYGFVIAVTQIDNIGAGLIQ 289
MF+HI LE + LHP++FGP L + + KL DVEGTC+G++GFV+A+T ++++G GLI+
Sbjct: 1 MFFHIVLERNMQLHPRHFGPHLRDKLVSKLIKDVEGTCSGRHGFVVAITGVEDVGKGLIR 60
Query: 290 HGQGFVMYPVKYKAVVFRPFKGEVLDGIVTQVNKVGMFAQIGPLKCFISHHSIPDYMEFC 469
G G+V +PVKY+ VVFRPFKGE+L+ +VT VNK+G FA+ GP++ F+S+H IPD MEF
Sbjct: 61 EGTGYVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEF- 119
Query: 470 PNVNPPCYKSKQEDSVIQEEDVIRLKIVGTRVDASGIFAIGTLIGDYL 613
+ + P Y + IQ++ +RLKI+GTRVDA+ IF IGT+ D+L
Sbjct: 120 QSGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFL 167
>05_01_0416 + 3283403-3283930
Length = 175
Score = 78.6 bits (185), Expect = 4e-15
Identities = 52/175 (29%), Positives = 94/175 (53%), Gaps = 7/175 (4%)
Frame = +2
Query: 110 MFYHISLEHEILLHPKYFGPQ---LLETVKQKLYTDVEGTCTGK-YGFVIAVTQIDNIGA 277
+F + + +L+ P PQ L + V +L D+ K +G+ IAV+++ I
Sbjct: 2 VFLKVEMSLNVLISPSQLSPQGLLLRKAVIVRLLEDIANRKASKDHGYYIAVSELKAISE 61
Query: 278 GLIQHGQGFVMYPVKYKAVVFRPFKGEVLDGIVTQVNKVGMFAQIGPLK-CFISHHSIPD 454
G ++ G V++PV + + +P KGEVL G V ++ K G+F + GP++ F+S ++ D
Sbjct: 62 GKVRELTGDVLFPVTFTCITQKPMKGEVLVGSVDKILKHGIFLKSGPIESIFLSEKTMSD 121
Query: 455 YMEFCPNVNPPCYKSKQEDSVIQEEDVIRLKIVGTR-VDASGIF-AIGTLIGDYL 613
+ ++ N E S ++++ V+R K++G R ++A F + TL GDYL
Sbjct: 122 F-KYIGGENA---VFMNEHSKLEKDTVVRFKVMGFRWMEADRQFQLLATLAGDYL 172
>05_03_0030 +
7529814-7530257,7530409-7530462,7531605-7532793,
7532861-7533522
Length = 782
Score = 63.7 bits (148), Expect = 1e-10
Identities = 39/151 (25%), Positives = 78/151 (51%), Gaps = 5/151 (3%)
Frame = +2
Query: 110 MFYHISLEHEILLHPKYFGPQ---LLETVKQKLYTDVEGTCTGK-YGFVIAVTQIDNIGA 277
+F + + +L+ P P+ L + V L ++ K +G+ IAV+++ I
Sbjct: 2 VFLKVDMSWNVLISPSELSPKGLLLRKAVIVSLLEEIANRKASKDHGYYIAVSELKAISE 61
Query: 278 GLIQHGQGFVMYPVKYKAVVFRPFKGEVLDGIVTQVNKVGMFAQIGPLK-CFISHHSIPD 454
G ++ G V++PV + + +P KGE+L G V ++ K G+F + GP++ F+S ++ D
Sbjct: 62 GKVRELTGDVLFPVTFTCITQKPTKGEILVGSVDKILKHGVFLKSGPIESIFLSEKTLSD 121
Query: 455 YMEFCPNVNPPCYKSKQEDSVIQEEDVIRLK 547
Y ++ NP + S ++++ +R K
Sbjct: 122 Y-KYIGGENP---MFMNDHSKLEKDTAVRFK 148
>07_03_0362 -
17217515-17217604,17217690-17217779,17217866-17217935,
17218362-17218425,17219117-17219204,17219631-17219726,
17219858-17219968
Length = 202
Score = 55.2 bits (127), Expect = 4e-08
Identities = 32/117 (27%), Positives = 56/117 (47%)
Frame = +2
Query: 110 MFYHISLEHEILLHPKYFGPQLLETVKQKLYTDVEGTCTGKYGFVIAVTQIDNIGAGLIQ 289
MF +EH + + P L++ +K +L G ++V I ++ G I
Sbjct: 1 MFVLSQIEHNLPMPPHLLSRPLVDAIKAELERLFLDKVVANLGLCVSVYDIRSVEGGFIF 60
Query: 290 HGQGFVMYPVKYKAVVFRPFKGEVLDGIVTQVNKVGMFAQIGPLKCFISHHSIPDYM 460
G+G Y V ++ ++FRPF GEVL G ++ ++ G+ + F S SIP ++
Sbjct: 61 PGEGCSTYKVSFRLLMFRPFVGEVLVGKISGYDEKGLHVSLD----FFSDISIPGHL 113
>09_04_0109 - 14674980-14675004,14675861-14676468
Length = 210
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = -1
Query: 345 GLNTTALYLTGYMTNPCPCCMRPAPILSI*VTAMTNPYLPVQVPST 208
G T + T + N +RP+P++S A T+P LP+ VP+T
Sbjct: 117 GARTIGEWGTTPLPNAIDKPLRPSPLISGRRQASTSPTLPLTVPAT 162
>01_01_0471 -
3467275-3467351,3467526-3467895,3468258-3468555,
3468680-3469734,3469823-3470467
Length = 814
Score = 28.3 bits (60), Expect = 5.1
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 132 STKFCYIRNISVHNYWRQSNRSYTLMWKA 218
S + + R VHN W Q ++S+ MW+A
Sbjct: 562 SAELHWCRRGRVHNDWAQKHKSFVDMWEA 590
>05_06_0118 + 25735966-25737601,25737698-25738488
Length = 808
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -1
Query: 405 ANMPTLFTCVTIPSKTSPLNGLNTTALYLTGYMTNPC 295
AN+ T+F + + P +GLN ++ + Y+ NPC
Sbjct: 509 ANLGTMFLDKKVVC-SKPCHGLNLVSIEMKDYLFNPC 544
>05_04_0299 -
19958776-19958858,19958883-19959012,19960131-19960175,
19960252-19960370,19960450-19960543,19961824-19961985,
19962117-19962266,19962472-19962537,19962934-19962981,
19963654-19963866,19963953-19964078,19964155-19964232,
19964600-19964671,19965522-19965953,19966863-19966925,
19967497-19967898
Length = 760
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +2
Query: 116 YHISLEHEILLHPKYFGPQLLETVKQKLYTDVEG 217
Y + L H + +HPK F L Q+L D++G
Sbjct: 446 YSMLLRHNVDMHPKSFAVGLRIEHPQELINDIQG 479
>03_06_0701 -
35620559-35620777,35620872-35620949,35621038-35621191,
35621279-35621391,35621487-35621586,35622193-35622389,
35622470-35622526,35622630-35622734,35622824-35622931,
35623651-35623848,35624022-35624024
Length = 443
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = -2
Query: 233 ICQYRCL-PHQCIASV*LSPIVVDRNISDVTKFRAPMK 123
IC Y L PH + S L+ + D+N+S++ FR +K
Sbjct: 261 ICWYLVLAPHDPMQSSLLNATLEDKNLSEIPNFRLLLK 298
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,879,557
Number of Sequences: 37544
Number of extensions: 363325
Number of successful extensions: 959
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 958
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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