Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt8m17
(615 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U52427-1|AAB96827.1| 172|Homo sapiens RNA polymerase II seventh... 291 1e-78
U20659-1|AAA86500.1| 172|Homo sapiens RNA polymerase II subunit... 291 1e-78
BC112164-1|AAI12165.1| 172|Homo sapiens DNA directed RNA polyme... 291 1e-78
BC112162-1|AAI12163.1| 172|Homo sapiens DNA directed RNA polyme... 291 1e-78
CR456459-1|CAG30345.1| 204|Homo sapiens dJ347H13.5 protein. 37 0.049
BC088367-1|AAH88367.1| 204|Homo sapiens polymerase (RNA) III (D... 37 0.049
AY092087-1|AAM18217.1| 204|Homo sapiens RNA polymerase III subu... 37 0.049
AL023553-2|CAB46023.1| 204|Homo sapiens protein ( hondrial acon... 37 0.049
AB051452-1|BAB33335.1| 217|Homo sapiens KIAA1665 protein protein. 37 0.049
M94131-1|AAA59163.1| 1270|Homo sapiens mucin protein. 29 9.9
M74027-1|AAA59875.1| 573|Homo sapiens mucin protein. 29 9.9
L21998-1|AAB95295.1| 5179|Homo sapiens mucin protein. 29 9.9
BC130300-1|AAI30301.1| 338|Homo sapiens TWIST neighbor protein. 29 9.9
BC130298-1|AAI30299.1| 338|Homo sapiens TWIST neighbor protein. 29 9.9
BC014574-1|AAH14574.1| 226|Homo sapiens TWISTNB protein protein. 29 9.9
>U52427-1|AAB96827.1| 172|Homo sapiens RNA polymerase II seventh
subunit protein.
Length = 172
Score = 291 bits (714), Expect = 1e-78
Identities = 131/168 (77%), Positives = 149/168 (88%)
Frame = +2
Query: 110 MFYHISLEHEILLHPKYFGPQLLETVKQKLYTDVEGTCTGKYGFVIAVTQIDNIGAGLIQ 289
MFYHISLEHEILLHP+YFGP LL TVKQKL+T+VEGTCTGKYGFVIAVT IDNIGAG+IQ
Sbjct: 1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60
Query: 290 HGQGFVMYPVKYKAVVFRPFKGEVLDGIVTQVNKVGMFAQIGPLKCFISHHSIPDYMEFC 469
G+GFV+YPVKYKA+VFRPFKGEV+D +VTQVNKVG+F +IGP+ CFIS HSIP MEF
Sbjct: 61 PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFD 120
Query: 470 PNVNPPCYKSKQEDSVIQEEDVIRLKIVGTRVDASGIFAIGTLIGDYL 613
PN NPPCYK+ ED VIQ++D IRLKIVGTRVD + IFAIG+L+ DYL
Sbjct: 121 PNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYL 168
>U20659-1|AAA86500.1| 172|Homo sapiens RNA polymerase II subunit
hsRPB7 protein.
Length = 172
Score = 291 bits (714), Expect = 1e-78
Identities = 131/168 (77%), Positives = 149/168 (88%)
Frame = +2
Query: 110 MFYHISLEHEILLHPKYFGPQLLETVKQKLYTDVEGTCTGKYGFVIAVTQIDNIGAGLIQ 289
MFYHISLEHEILLHP+YFGP LL TVKQKL+T+VEGTCTGKYGFVIAVT IDNIGAG+IQ
Sbjct: 1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60
Query: 290 HGQGFVMYPVKYKAVVFRPFKGEVLDGIVTQVNKVGMFAQIGPLKCFISHHSIPDYMEFC 469
G+GFV+YPVKYKA+VFRPFKGEV+D +VTQVNKVG+F +IGP+ CFIS HSIP MEF
Sbjct: 61 PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFD 120
Query: 470 PNVNPPCYKSKQEDSVIQEEDVIRLKIVGTRVDASGIFAIGTLIGDYL 613
PN NPPCYK+ ED VIQ++D IRLKIVGTRVD + IFAIG+L+ DYL
Sbjct: 121 PNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYL 168
>BC112164-1|AAI12165.1| 172|Homo sapiens DNA directed RNA
polymerase II polypeptide G protein.
Length = 172
Score = 291 bits (714), Expect = 1e-78
Identities = 131/168 (77%), Positives = 149/168 (88%)
Frame = +2
Query: 110 MFYHISLEHEILLHPKYFGPQLLETVKQKLYTDVEGTCTGKYGFVIAVTQIDNIGAGLIQ 289
MFYHISLEHEILLHP+YFGP LL TVKQKL+T+VEGTCTGKYGFVIAVT IDNIGAG+IQ
Sbjct: 1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60
Query: 290 HGQGFVMYPVKYKAVVFRPFKGEVLDGIVTQVNKVGMFAQIGPLKCFISHHSIPDYMEFC 469
G+GFV+YPVKYKA+VFRPFKGEV+D +VTQVNKVG+F +IGP+ CFIS HSIP MEF
Sbjct: 61 PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFD 120
Query: 470 PNVNPPCYKSKQEDSVIQEEDVIRLKIVGTRVDASGIFAIGTLIGDYL 613
PN NPPCYK+ ED VIQ++D IRLKIVGTRVD + IFAIG+L+ DYL
Sbjct: 121 PNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYL 168
>BC112162-1|AAI12163.1| 172|Homo sapiens DNA directed RNA
polymerase II polypeptide G protein.
Length = 172
Score = 291 bits (714), Expect = 1e-78
Identities = 131/168 (77%), Positives = 149/168 (88%)
Frame = +2
Query: 110 MFYHISLEHEILLHPKYFGPQLLETVKQKLYTDVEGTCTGKYGFVIAVTQIDNIGAGLIQ 289
MFYHISLEHEILLHP+YFGP LL TVKQKL+T+VEGTCTGKYGFVIAVT IDNIGAG+IQ
Sbjct: 1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60
Query: 290 HGQGFVMYPVKYKAVVFRPFKGEVLDGIVTQVNKVGMFAQIGPLKCFISHHSIPDYMEFC 469
G+GFV+YPVKYKA+VFRPFKGEV+D +VTQVNKVG+F +IGP+ CFIS HSIP MEF
Sbjct: 61 PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFD 120
Query: 470 PNVNPPCYKSKQEDSVIQEEDVIRLKIVGTRVDASGIFAIGTLIGDYL 613
PN NPPCYK+ ED VIQ++D IRLKIVGTRVD + IFAIG+L+ DYL
Sbjct: 121 PNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYL 168
>CR456459-1|CAG30345.1| 204|Homo sapiens dJ347H13.5 protein.
Length = 204
Score = 37.1 bits (82), Expect = 0.049
Identities = 22/102 (21%), Positives = 43/102 (42%)
Frame = +2
Query: 110 MFYHISLEHEILLHPKYFGPQLLETVKQKLYTDVEGTCTGKYGFVIAVTQIDNIGAGLIQ 289
MF + + + + P F +L +++ ++L + G I + I + +
Sbjct: 1 MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVF 60
Query: 290 HGQGFVMYPVKYKAVVFRPFKGEVLDGIVTQVNKVGMFAQIG 415
G G V ++ VVF PF E+L G + + G+ +G
Sbjct: 61 PGDGASHTKVHFRCVVFHPFLDEILIGKIKGCSPEGVHVSLG 102
>BC088367-1|AAH88367.1| 204|Homo sapiens polymerase (RNA) III (DNA
directed) polypeptide H (22.9kD) protein.
Length = 204
Score = 37.1 bits (82), Expect = 0.049
Identities = 22/102 (21%), Positives = 43/102 (42%)
Frame = +2
Query: 110 MFYHISLEHEILLHPKYFGPQLLETVKQKLYTDVEGTCTGKYGFVIAVTQIDNIGAGLIQ 289
MF + + + + P F +L +++ ++L + G I + I + +
Sbjct: 1 MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVF 60
Query: 290 HGQGFVMYPVKYKAVVFRPFKGEVLDGIVTQVNKVGMFAQIG 415
G G V ++ VVF PF E+L G + + G+ +G
Sbjct: 61 PGDGASHTKVHFRCVVFHPFLDEILIGKIKGCSPEGVHVSLG 102
>AY092087-1|AAM18217.1| 204|Homo sapiens RNA polymerase III subunit
RPC8 protein.
Length = 204
Score = 37.1 bits (82), Expect = 0.049
Identities = 22/102 (21%), Positives = 43/102 (42%)
Frame = +2
Query: 110 MFYHISLEHEILLHPKYFGPQLLETVKQKLYTDVEGTCTGKYGFVIAVTQIDNIGAGLIQ 289
MF + + + + P F +L +++ ++L + G I + I + +
Sbjct: 1 MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVF 60
Query: 290 HGQGFVMYPVKYKAVVFRPFKGEVLDGIVTQVNKVGMFAQIG 415
G G V ++ VVF PF E+L G + + G+ +G
Sbjct: 61 PGDGASHTKVHFRCVVFHPFLDEILIGKIKGCSPEGVHVSLG 102
>AL023553-2|CAB46023.1| 204|Homo sapiens protein ( hondrial
aconitase 2, the gene Statin S).).
Length = 204
Score = 37.1 bits (82), Expect = 0.049
Identities = 22/102 (21%), Positives = 43/102 (42%)
Frame = +2
Query: 110 MFYHISLEHEILLHPKYFGPQLLETVKQKLYTDVEGTCTGKYGFVIAVTQIDNIGAGLIQ 289
MF + + + + P F +L +++ ++L + G I + I + +
Sbjct: 1 MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVF 60
Query: 290 HGQGFVMYPVKYKAVVFRPFKGEVLDGIVTQVNKVGMFAQIG 415
G G V ++ VVF PF E+L G + + G+ +G
Sbjct: 61 PGDGASHTKVHFRCVVFHPFLDEILIGKIKGCSPEGVHVSLG 102
>AB051452-1|BAB33335.1| 217|Homo sapiens KIAA1665 protein protein.
Length = 217
Score = 37.1 bits (82), Expect = 0.049
Identities = 22/102 (21%), Positives = 43/102 (42%)
Frame = +2
Query: 110 MFYHISLEHEILLHPKYFGPQLLETVKQKLYTDVEGTCTGKYGFVIAVTQIDNIGAGLIQ 289
MF + + + + P F +L +++ ++L + G I + I + +
Sbjct: 14 MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVF 73
Query: 290 HGQGFVMYPVKYKAVVFRPFKGEVLDGIVTQVNKVGMFAQIG 415
G G V ++ VVF PF E+L G + + G+ +G
Sbjct: 74 PGDGASHTKVHFRCVVFHPFLDEILIGKIKGCSPEGVHVSLG 115
>M94131-1|AAA59163.1| 1270|Homo sapiens mucin protein.
Length = 1270
Score = 29.5 bits (63), Expect = 9.9
Identities = 19/63 (30%), Positives = 28/63 (44%)
Frame = -1
Query: 396 PTLFTCVTIPSKTSPLNGLNTTALYLTGYMTNPCPCCMRPAPILSI*VTAMTNPYLPVQV 217
P + T T P T+P + + TT T MT P P +PI + T ++ P
Sbjct: 1042 PPITTTTTPPPTTTPSSPITTTPSPPTTTMTTPSPTTTPSSPITT--TTTPSSTTTPSPP 1099
Query: 216 PST 208
P+T
Sbjct: 1100 PTT 1102
>M74027-1|AAA59875.1| 573|Homo sapiens mucin protein.
Length = 573
Score = 29.5 bits (63), Expect = 9.9
Identities = 19/63 (30%), Positives = 28/63 (44%)
Frame = -1
Query: 396 PTLFTCVTIPSKTSPLNGLNTTALYLTGYMTNPCPCCMRPAPILSI*VTAMTNPYLPVQV 217
P + T T P T+P + + TT T MT P P +PI + T ++ P
Sbjct: 325 PPITTTTTPPPTTTPSSPITTTPSPPTTTMTTPSPTTTPSSPITT--TTTPSSTTTPSPP 382
Query: 216 PST 208
P+T
Sbjct: 383 PTT 385
>L21998-1|AAB95295.1| 5179|Homo sapiens mucin protein.
Length = 5179
Score = 29.5 bits (63), Expect = 9.9
Identities = 19/63 (30%), Positives = 28/63 (44%)
Frame = -1
Query: 396 PTLFTCVTIPSKTSPLNGLNTTALYLTGYMTNPCPCCMRPAPILSI*VTAMTNPYLPVQV 217
P + T T P T+P + + TT T MT P P +PI + T ++ P
Sbjct: 1667 PPITTTTTPPPTTTPSSPITTTPSPPTTTMTTPSPTTTPSSPITT--TTTPSSTTTPSPP 1724
Query: 216 PST 208
P+T
Sbjct: 1725 PTT 1727
>BC130300-1|AAI30301.1| 338|Homo sapiens TWIST neighbor protein.
Length = 338
Score = 29.5 bits (63), Expect = 9.9
Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Frame = +2
Query: 131 EHEILLHPKYFGPQLLETVKQKLYTDVEGTCTGKYGFVIAVTQIDNIGA-GLIQHGQGFV 307
+ I L P+Y + ++++L ++ G IA I +G G I QG +
Sbjct: 54 QRHIALSPRYLNRKRTG-IREQLDAELLRYSESLLGVPIAYDNIKVVGELGDIYDDQGHI 112
Query: 308 MYPVKYKAVVFRPFKGEVLDGIVTQVN 388
++ V+F P G+ L GIV +V+
Sbjct: 113 HLNIEADFVIFCPEPGQKLMGIVNKVS 139
>BC130298-1|AAI30299.1| 338|Homo sapiens TWIST neighbor protein.
Length = 338
Score = 29.5 bits (63), Expect = 9.9
Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Frame = +2
Query: 131 EHEILLHPKYFGPQLLETVKQKLYTDVEGTCTGKYGFVIAVTQIDNIGA-GLIQHGQGFV 307
+ I L P+Y + ++++L ++ G IA I +G G I QG +
Sbjct: 54 QRHIALSPRYLNRKRTG-IREQLDAELLRYSESLLGVPIAYDNIKVVGELGDIYDDQGHI 112
Query: 308 MYPVKYKAVVFRPFKGEVLDGIVTQVN 388
++ V+F P G+ L GIV +V+
Sbjct: 113 HLNIEADFVIFCPEPGQKLMGIVNKVS 139
>BC014574-1|AAH14574.1| 226|Homo sapiens TWISTNB protein protein.
Length = 226
Score = 29.5 bits (63), Expect = 9.9
Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Frame = +2
Query: 131 EHEILLHPKYFGPQLLETVKQKLYTDVEGTCTGKYGFVIAVTQIDNIGA-GLIQHGQGFV 307
+ I L P+Y + ++++L ++ G IA I +G G I QG +
Sbjct: 54 QRHIALSPRYLNRKRTG-IREQLDAELLRYSESLLGVPIAYDNIKVVGELGDIYDDQGHI 112
Query: 308 MYPVKYKAVVFRPFKGEVLDGIVTQVN 388
++ V+F P G+ L GIV +V+
Sbjct: 113 HLNIEADFVIFCPEPGQKLMGIVNKVS 139
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,770,789
Number of Sequences: 237096
Number of extensions: 2188308
Number of successful extensions: 4384
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 4123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4384
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6579110070
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -