Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8m17
         (615 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    24   1.0  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    22   5.5  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     21   7.2  

>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
 Frame = +3

Query: 75  WNTNR-----NLSTAEKCSTTFHWSTKFCYIRNISVHNYWRQSNR-SYTLMWKAPVLANM 236
           WN NR     N+    K + T  + +    I+ IS + Y RQ+N   + +  K   +AN 
Sbjct: 327 WNENRPLKRRNIEIVAKNNDTLQFISGIKIIKQISSNIYERQNNEYIWIVSNKYQKIANG 386

Query: 237 DLS 245
           DL+
Sbjct: 387 DLN 389


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 103 LKNVLPHFIGARNFVTSE 156
           +K  LPHF+G+   V  E
Sbjct: 357 IKEELPHFVGSNKPVKDE 374


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 115 EHFSAVDKLRLVFHSIRFVLLLFF 44
           EHF+A+     V  S++ VLL  F
Sbjct: 95  EHFTALGNFYFVHESLKNVLLWDF 118


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,226
Number of Sequences: 438
Number of extensions: 4119
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)