Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8m16
         (496 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    23   1.8  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   1.8  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   7.2  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   9.5  

>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 89  LXTGCRHPSRGGGLPSA 139
           L + C  PSRG  +PS+
Sbjct: 12  LLSSCTRPSRGNAVPSS 28


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 89  LXTGCRHPSRGGGLPSA 139
           L + C  PSRG  +PS+
Sbjct: 12  LLSSCTRPSRGNAVPSS 28


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 7/24 (29%), Positives = 12/24 (50%)
 Frame = +2

Query: 107 HPSRGGGLPSAXQEYGYFEGHFHP 178
           +PS  G LP +   + +    +HP
Sbjct: 305 YPSTAGFLPPSYHPHQHHPSQYHP 328


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +3

Query: 408 SKVIRNRLSEPGAEN 452
           SK+ R+ LS+PG+ N
Sbjct: 148 SKIGRDELSQPGSLN 162


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,589
Number of Sequences: 438
Number of extensions: 3333
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13667319
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)