Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8m11
         (517 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3 |Schizosacch...    31   0.077
SPAC13G7.12c |||choline kinase |Schizosaccharomyces pombe|chr 1|...    31   0.10 
SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr 1...    26   2.9  
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    26   2.9  
SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr ...    26   2.9  
SPBC25B2.08 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   3.8  
SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|...    25   5.1  
SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces...    25   5.1  

>SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 747

 Score = 31.5 bits (68), Expect = 0.077
 Identities = 14/35 (40%), Positives = 23/35 (65%)
 Frame = +1

Query: 328 KRESSPETELETAASKLVKKSMARSNSFSIEEPKK 432
           K + SP+ ++ ++  K +KKS  R+NS S  EP+K
Sbjct: 5   KNQKSPKPKVASSKLKNIKKSSKRNNSQSSTEPRK 39


>SPAC13G7.12c |||choline kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 31.1 bits (67), Expect = 0.10
 Identities = 13/22 (59%), Positives = 17/22 (77%)
 Frame = +1

Query: 235 ELEFRRISGGLSNFLYYVALPE 300
           +L  +RISG L+N +YYVA PE
Sbjct: 62  KLHIKRISGALTNAVYYVAPPE 83


>SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +2

Query: 215 GRAWIQLNWSLGGSAAVSRISCT 283
           G AW+ + W++G +AA+S ++ T
Sbjct: 292 GLAWLIVPWAMGSAAALSCLALT 314


>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1014

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 16/61 (26%), Positives = 30/61 (49%)
 Frame = +1

Query: 331  RESSPETELETAASKLVKKSMARSNSFSIEEPKKVLLRIYGQVHGERAMDAIVTESVIFT 510
            RES  +T + +  ++ + KS   + S  +  PKK   +I  +  G   +D  V E+ + +
Sbjct: 833  RESLEKTRVSSNDNRTLAKSFETTESNKMSTPKKSFEQIKSKSLGVTNVDGTVNEARLRS 892

Query: 511  L 513
            L
Sbjct: 893  L 893


>SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 551

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 13/52 (25%), Positives = 28/52 (53%)
 Frame = +1

Query: 124 KMAKKLQMCGTEAEMREVAARICRNYLHGAWKSVDPTELEFRRISGGLSNFL 279
           K+  ++  C  +A+ +++ A   R Y+H       PT +EF   +G +++F+
Sbjct: 229 KIRARILHCLEQAQFKDLPAETRRRYVHTVVVGGGPTGMEF---AGEMADFI 277


>SPBC25B2.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 125

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +1

Query: 298 EDPSKLCTFTKRESSPETELETAASKLVKKSMARSNSFSI 417
           EDPSKLC  +++ ++P      +  K    S+ RS SF +
Sbjct: 35  EDPSKLCISSEKLNTPMHNRSRSGIK-KHTSVKRSRSFKL 73


>SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 736

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
 Frame = +1

Query: 91  LFTE*KED*YVKMAKKLQMCGTEAE-----MREVAARICRNYLHGAWKSVDPTELEFRRI 255
           LF+  K D YV    +L +CG +        R +  R+ + Y H A+  +DP + E    
Sbjct: 321 LFSTSKSD-YV--VPRLMVCGPKGSGKSSFSRYITNRLLQQYRHIAYLDLDPGQPEVVP- 376

Query: 256 SGGLSNFLYYVALP 297
           SG +S  LYY+  P
Sbjct: 377 SGHIS--LYYINSP 388


>SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = +1

Query: 193 RNYLHGAWKSVDPTELEFRRISGGLSN 273
           ++Y H AW   + T+ +   +SGG+ +
Sbjct: 122 KSYYHNAWMQSENTKSKGNNVSGGIES 148


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,890,082
Number of Sequences: 5004
Number of extensions: 32097
Number of successful extensions: 112
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)