Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt8m11
(517 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0379 + 24518724-24518950,24519076-24519343,24519482-245196... 28 3.9
04_04_1287 - 32390422-32391588,32392472-32392645 28 3.9
04_04_1049 + 30414545-30414596,30414732-30414853,30415121-304151... 28 3.9
01_01_0833 - 6517489-6517503,6517762-6517827,6517938-6518006,651... 28 3.9
09_04_0257 + 16170914-16171113,16171362-16171554,16171929-161720... 28 5.1
05_07_0144 - 28007477-28008412 28 5.1
03_02_0326 + 7474352-7474448,7474913-7474977,7475105-7475191,747... 28 5.1
01_06_0838 + 32331588-32332346 27 6.8
12_02_0632 + 21379548-21379886 27 8.9
08_01_0998 - 10136050-10138356 27 8.9
01_06_1767 + 39766350-39766508,39766602-39766654,39766763-397668... 27 8.9
>05_05_0379 +
24518724-24518950,24519076-24519343,24519482-24519616,
24519795-24519860,24520073-24520138,24520294-24520350,
24520767-24520919
Length = 323
Score = 28.3 bits (60), Expect = 3.9
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = +3
Query: 252 DQRRSLEFPVLRGASGRPVEALHVHETRKLTGNRTG 359
DQ SL P LR GRPV+ H + K+ GN G
Sbjct: 251 DQVASLSSPYLR--CGRPVQLQHQQGSHKVNGNCEG 284
>04_04_1287 - 32390422-32391588,32392472-32392645
Length = 446
Score = 28.3 bits (60), Expect = 3.9
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = +1
Query: 331 RESSPETELETAASKLVKKSMARSNSFSIEEP 426
+E+SPETELET+ L S A NS EP
Sbjct: 365 KETSPETELETSKDSL---SEANQNSTQAVEP 393
>04_04_1049 +
30414545-30414596,30414732-30414853,30415121-30415198,
30415329-30415459,30415644-30417552,30417797-30417836,
30418194-30418259,30418583-30418734
Length = 849
Score = 28.3 bits (60), Expect = 3.9
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +3
Query: 141 ANVRHGSGNARSRRPNLQELPARSVEERG 227
+++ G G++ SRR +L P+ +V+ERG
Sbjct: 155 SSMERGGGSSSSRRRSLSREPSSAVQERG 183
>01_01_0833 -
6517489-6517503,6517762-6517827,6517938-6518006,
6518104-6518214,6518319-6518526,6518598-6518653,
6519048-6519689
Length = 388
Score = 28.3 bits (60), Expect = 3.9
Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +1
Query: 259 GGLSNFLYYVALPE-DPSKLCTFTKRESSPETELETAASKLVKKSMARSNSFS 414
G + LY V L E DP L T +R E EL A + + S + S SFS
Sbjct: 54 GVVDGELYDVELEEGDPGMLWTGDERPVQTEEELYWACRNIRRSSTSTSGSFS 106
>09_04_0257 +
16170914-16171113,16171362-16171554,16171929-16172034,
16172293-16172415,16172739-16172830,16173276-16173376,
16173458-16173524,16174016-16174108,16174247-16174375
Length = 367
Score = 27.9 bits (59), Expect = 5.1
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +1
Query: 187 ICRNYLHGAWKSVDPTELEFRRISGGLSN 273
IC+ + G W S+D + +SGG++N
Sbjct: 9 ICKELVRG-WSSLDSSRFSIETVSGGITN 36
>05_07_0144 - 28007477-28008412
Length = 311
Score = 27.9 bits (59), Expect = 5.1
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 2/90 (2%)
Frame = +1
Query: 130 AKKLQMCGTEAEMREVAARICRNYLHGAWKSVDPTELEFRRISGGLS-NFLYYVALPEDP 306
A L++C + AA++ +LH KS +P E S GL+ + Y A P D
Sbjct: 179 AASLRLCPLLSAAEREAAKLVEEFLHKKKKSPEPKPREKGEKSPGLAVRVVVYRASPLDV 238
Query: 307 SKLCTFTKRESSPETEL-ETAASKLVKKSM 393
+ T+R S+ T + + ++LV + +
Sbjct: 239 MAM-ELTRRLSNCHTIIRQKETTRLVDRGV 267
>03_02_0326 +
7474352-7474448,7474913-7474977,7475105-7475191,
7475393-7475440,7476086-7476142,7476588-7476687,
7476875-7477185,7477298-7477667,7478745-7478876,
7479362-7479575,7479650-7479710,7480098-7480292
Length = 578
Score = 27.9 bits (59), Expect = 5.1
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +1
Query: 328 KRESSPETELETAASKLVKKSMARSNSFSIEEPKKVLLRIYGQV 459
KRE+ E ++ K R N ++ P+KVL + +G+V
Sbjct: 369 KRETYSEVDVAVDVDSFPMKEKLRRNPLKMDIPEKVLSQAHGKV 412
>01_06_0838 + 32331588-32332346
Length = 252
Score = 27.5 bits (58), Expect = 6.8
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Frame = +1
Query: 331 RESSPETELETAASKLVKKSMAR--SNSFSIEEPKKVLLRIYGQVHGERAMDAIVTESVI 504
RE + +T A+ S+A S+S S EP+ V ++ +++D + ESV+
Sbjct: 3 REGGRDDGDDTGAASTSPNSVANQSSSSSSSSEPEPVPFPVHRLARYSKSIDKAIRESVL 62
Query: 505 FTLL 516
LL
Sbjct: 63 INLL 66
>12_02_0632 + 21379548-21379886
Length = 112
Score = 27.1 bits (57), Expect = 8.9
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +3
Query: 330 TRKLTGNRTGDGGQ*ASQEIDGQ 398
TR++ G+ GDGG+ A++ DG+
Sbjct: 90 TREMDGDGVGDGGELATERDDGE 112
>08_01_0998 - 10136050-10138356
Length = 768
Score = 27.1 bits (57), Expect = 8.9
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = +2
Query: 176 SPPESAGTTCTERGRAWIQLNWSLGGSAAVSRISCTTW 289
S P + +T + G A L W SAA S TTW
Sbjct: 26 STPPCSSSTIIQHGEAESLLRWKSTLSAAASASPLTTW 63
>01_06_1767 +
39766350-39766508,39766602-39766654,39766763-39766829,
39766929-39766984,39767287-39767791,39767981-39768069,
39768678-39768768,39769052-39769177,39769256-39769513,
39769748-39770029
Length = 561
Score = 27.1 bits (57), Expect = 8.9
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +1
Query: 172 EVAARICRNYLHGAWKSVDPTELEFRRISGGLS 270
E+ R R + W S ++LE +RI GG+S
Sbjct: 82 ELVERALREAMEEGWDSTALSQLEDQRIDGGMS 114
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,186,318
Number of Sequences: 37544
Number of extensions: 248245
Number of successful extensions: 817
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 797
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 817
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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