Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt8m11
(517 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U64598-12|AAX88835.1| 408|Caenorhabditis elegans Choline kinase... 46 2e-05
U64598-11|AAK39220.1| 429|Caenorhabditis elegans Choline kinase... 46 2e-05
Z82259-2|CAB05129.1| 474|Caenorhabditis elegans Hypothetical pr... 44 6e-05
AF067937-2|AAF99916.1| 381|Caenorhabditis elegans Choline kinas... 33 0.12
Z92967-2|CAB07478.1| 1101|Caenorhabditis elegans Hypothetical pr... 29 2.0
Z82052-10|CAB04830.1| 1101|Caenorhabditis elegans Hypothetical p... 29 2.0
AL021572-4|CAA16519.1| 1101|Caenorhabditis elegans Hypothetical ... 29 2.0
AL021507-1|CAA16430.1| 1101|Caenorhabditis elegans Hypothetical ... 29 2.0
U58757-10|AAK66020.1| 66|Caenorhabditis elegans Histone h1 lik... 27 6.0
AC024211-1|AAF36065.1| 252|Caenorhabditis elegans Hypothetical ... 27 6.0
Z66500-14|CAA91313.2| 1169|Caenorhabditis elegans Hypothetical p... 27 8.0
Z49968-13|CAA90265.2| 1169|Caenorhabditis elegans Hypothetical p... 27 8.0
>U64598-12|AAX88835.1| 408|Caenorhabditis elegans Choline kinase a
protein 2, isoformb protein.
Length = 408
Score = 46.0 bits (104), Expect = 2e-05
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 7/83 (8%)
Frame = +1
Query: 154 TEAEMREVAARICRNYLHGAWKSVDPTELEFRRISGGLSNFLYYVALPE-------DPSK 312
T E++E A +C +L GAWK+V L RI GG+SN L+ L E +P+K
Sbjct: 27 TIPELKERAHMLCARFLGGAWKTVPLEHLRISRIKGGMSNMLFLCRLSEVYPPIRNEPNK 86
Query: 313 LCTFTKRESSPETELETAASKLV 381
+ + +PETE A ++
Sbjct: 87 V--LLRVYFNPETESHLVAESVI 107
Score = 31.1 bits (67), Expect = 0.49
Identities = 18/32 (56%), Positives = 20/32 (62%)
Frame = +1
Query: 421 EPKKVLLRIYGQVHGERAMDAIVTESVIFTLL 516
EP KVLLR+Y E +V ESVIFTLL
Sbjct: 83 EPNKVLLRVYFNPETE---SHLVAESVIFTLL 111
>U64598-11|AAK39220.1| 429|Caenorhabditis elegans Choline kinase a
protein 2, isoforma protein.
Length = 429
Score = 46.0 bits (104), Expect = 2e-05
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 7/83 (8%)
Frame = +1
Query: 154 TEAEMREVAARICRNYLHGAWKSVDPTELEFRRISGGLSNFLYYVALPE-------DPSK 312
T E++E A +C +L GAWK+V L RI GG+SN L+ L E +P+K
Sbjct: 48 TIPELKERAHMLCARFLGGAWKTVPLEHLRISRIKGGMSNMLFLCRLSEVYPPIRNEPNK 107
Query: 313 LCTFTKRESSPETELETAASKLV 381
+ + +PETE A ++
Sbjct: 108 V--LLRVYFNPETESHLVAESVI 128
Score = 31.1 bits (67), Expect = 0.49
Identities = 18/32 (56%), Positives = 20/32 (62%)
Frame = +1
Query: 421 EPKKVLLRIYGQVHGERAMDAIVTESVIFTLL 516
EP KVLLR+Y E +V ESVIFTLL
Sbjct: 104 EPNKVLLRVYFNPETE---SHLVAESVIFTLL 132
>Z82259-2|CAB05129.1| 474|Caenorhabditis elegans Hypothetical
protein C28D4.2 protein.
Length = 474
Score = 44.0 bits (99), Expect = 6e-05
Identities = 18/37 (48%), Positives = 23/37 (62%)
Frame = +1
Query: 187 ICRNYLHGAWKSVDPTELEFRRISGGLSNFLYYVALP 297
+C YL GAW+ V E R I+GG+SN L+ V LP
Sbjct: 95 LCAKYLGGAWRKVKIEEFRIRAITGGMSNLLFLVELP 131
Score = 31.1 bits (67), Expect = 0.49
Identities = 16/32 (50%), Positives = 23/32 (71%)
Frame = +1
Query: 421 EPKKVLLRIYGQVHGERAMDAIVTESVIFTLL 516
EP+K LLR VH + +D +++ESV+FTLL
Sbjct: 140 EPEKALLR----VHCQSDIDQLLSESVVFTLL 167
>AF067937-2|AAF99916.1| 381|Caenorhabditis elegans Choline kinase b
protein 4 protein.
Length = 381
Score = 33.1 bits (72), Expect = 0.12
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +1
Query: 196 NYLHGAWKSVDPTELEFRRISGGLSNFLY 282
+YL G W V+ +E+ +I+GG SN LY
Sbjct: 29 DYLRGGWALVEKSEVTVTQITGGQSNILY 57
>Z92967-2|CAB07478.1| 1101|Caenorhabditis elegans Hypothetical
protein T25E12.4a protein.
Length = 1101
Score = 29.1 bits (62), Expect = 2.0
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +1
Query: 226 DPTELEFRRISGGLSNFLYYVALPEDPSKLCTFTKRES-SPETELETAASKLV 381
+P E+E R+SG S+ +Y E S L ++ E+ +P + A+S+ V
Sbjct: 68 NPDEIEVSRVSGRDSSLAFYTTAHETSSMLSRDSRDETLTPNEHIHQASSRRV 120
>Z82052-10|CAB04830.1| 1101|Caenorhabditis elegans Hypothetical
protein T25E12.4a protein.
Length = 1101
Score = 29.1 bits (62), Expect = 2.0
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +1
Query: 226 DPTELEFRRISGGLSNFLYYVALPEDPSKLCTFTKRES-SPETELETAASKLV 381
+P E+E R+SG S+ +Y E S L ++ E+ +P + A+S+ V
Sbjct: 68 NPDEIEVSRVSGRDSSLAFYTTAHETSSMLSRDSRDETLTPNEHIHQASSRRV 120
>AL021572-4|CAA16519.1| 1101|Caenorhabditis elegans Hypothetical
protein T25E12.4a protein.
Length = 1101
Score = 29.1 bits (62), Expect = 2.0
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +1
Query: 226 DPTELEFRRISGGLSNFLYYVALPEDPSKLCTFTKRES-SPETELETAASKLV 381
+P E+E R+SG S+ +Y E S L ++ E+ +P + A+S+ V
Sbjct: 68 NPDEIEVSRVSGRDSSLAFYTTAHETSSMLSRDSRDETLTPNEHIHQASSRRV 120
>AL021507-1|CAA16430.1| 1101|Caenorhabditis elegans Hypothetical
protein T25E12.4a protein.
Length = 1101
Score = 29.1 bits (62), Expect = 2.0
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +1
Query: 226 DPTELEFRRISGGLSNFLYYVALPEDPSKLCTFTKRES-SPETELETAASKLV 381
+P E+E R+SG S+ +Y E S L ++ E+ +P + A+S+ V
Sbjct: 68 NPDEIEVSRVSGRDSSLAFYTTAHETSSMLSRDSRDETLTPNEHIHQASSRRV 120
>U58757-10|AAK66020.1| 66|Caenorhabditis elegans Histone h1 like
protein 7, isoformb protein.
Length = 66
Score = 27.5 bits (58), Expect = 6.0
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +1
Query: 289 ALPEDPSKLCTFTKRESSPETELETAASKLVKKSMARSNSFSIEEPKK 432
A P+ P F K ++SP+ A K VKK+ A+ + PKK
Sbjct: 18 AKPKAPKVKKYFLKIQASPKKAAAPKAKKPVKKAAAKKSPAKKAAPKK 65
>AC024211-1|AAF36065.1| 252|Caenorhabditis elegans Hypothetical
protein Y76B12C.4 protein.
Length = 252
Score = 27.5 bits (58), Expect = 6.0
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +1
Query: 319 TFTKRESSPETELETAASKLVKKSMARSNSFSIEEPKKV 435
T TK ++P TE E ++ K KK A + S KKV
Sbjct: 186 TETKNSTTPSTEKEKSSMKKTKKEAAVATGTSGSAKKKV 224
>Z66500-14|CAA91313.2| 1169|Caenorhabditis elegans Hypothetical
protein T05C12.10 protein.
Length = 1169
Score = 27.1 bits (57), Expect = 8.0
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = +3
Query: 288 GASGRPVEALHVHETRKLTGNRTGDGGQ*ASQEIDGQI 401
GA+G +++H N + +GG+ +S++ DGQ+
Sbjct: 264 GAAGSDKSNINIHVESNGNNNNSFEGGRSSSEKSDGQL 301
>Z49968-13|CAA90265.2| 1169|Caenorhabditis elegans Hypothetical
protein T05C12.10 protein.
Length = 1169
Score = 27.1 bits (57), Expect = 8.0
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = +3
Query: 288 GASGRPVEALHVHETRKLTGNRTGDGGQ*ASQEIDGQI 401
GA+G +++H N + +GG+ +S++ DGQ+
Sbjct: 264 GAAGSDKSNINIHVESNGNNNNSFEGGRSSSEKSDGQL 301
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,628,760
Number of Sequences: 27780
Number of extensions: 190201
Number of successful extensions: 614
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 612
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -