Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8m08
         (549 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.06 |gln1||glutamate-ammonia ligase Gln1|Schizosaccharom...   107   1e-24
SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9 |Schizosacchar...    29   0.45 
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha...    27   1.8  
SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces pom...    27   2.4  
SPCC1450.07c |||D-amino acid oxidase |Schizosaccharomyces pombe|...    26   4.2  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    25   7.3  
SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces p...    25   7.3  
SPBC211.07c |ubc8||ubiquitin conjugating enzyme Ubc8|Schizosacch...    25   7.3  
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    25   7.3  
SPAC13G7.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   7.3  
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S...    25   9.7  
SPBC3B9.12 |||TRAPP complex subunit Trs23 |Schizosaccharomyces p...    25   9.7  

>SPAC23H4.06 |gln1||glutamate-ammonia ligase
           Gln1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 359

 Score =  107 bits (256), Expect = 1e-24
 Identities = 56/109 (51%), Positives = 72/109 (66%), Gaps = 1/109 (0%)
 Frame = +2

Query: 221 VLSKT-LLSRYNDLPLPADKILATYIWIDGSGEHLRCKDRTLNFIPKAPKDLPIWNFDGS 397
           +LSK  +L++Y DLP    K++A YIWIDG   HLR K  TL+  P +   L +WNFDGS
Sbjct: 9   LLSKAAILNKYADLPQNG-KVMAEYIWIDGFN-HLRSKTMTLDAKPSSIDQLRVWNFDGS 66

Query: 398 STNQADGHNSDTYLVPRAIYKDPFRRGNHILVMCDTYKYNMEPTESNNR 544
           ST QA G+NSDT L P A+Y DPFRRG++ILV+   Y  +  P   N+R
Sbjct: 67  STGQAPGNNSDTLLKPVAMYNDPFRRGDNILVLAACYTADGSPNGFNHR 115


>SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 524

 Score = 29.1 bits (62), Expect = 0.45
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -3

Query: 343 QGAIFAPQVFARAVDPNVGGENLVSRQWKIIVSTQ 239
           Q  IF     AR    +VGG +  SR WKI+  +Q
Sbjct: 292 QDVIFGVDALARERCVSVGGRDRTSRLWKIVEESQ 326


>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
           Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 697

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +2

Query: 155 HTKIEDNPKILSGPVLTNSPNAVLSKTLLSRYNDLPLPA 271
           H KIE+N + +S P ++ S    L    L  +  + LPA
Sbjct: 116 HDKIEENKRPISQPQVSASEKVTLKDLSLEPHQPVSLPA 154


>SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 447

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 17/69 (24%), Positives = 32/69 (46%)
 Frame = +2

Query: 164 IEDNPKILSGPVLTNSPNAVLSKTLLSRYNDLPLPADKILATYIWIDGSGEHLRCKDRTL 343
           ++DN  + S     +S N+ LS +    +  +P+PA  +  T +  D +    R    T 
Sbjct: 295 LQDNASLTSQGSNLSSQNSGLSSSSSGIFGRMPIPAQSLDTTMLRTDSNSNIRRA---TT 351

Query: 344 NFIPKAPKD 370
           +FI  + K+
Sbjct: 352 SFIANSEKE 360


>SPCC1450.07c |||D-amino acid oxidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 348

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 395 SSTNQADGHNSDTYLVPRAI 454
           + T   +G NSDTY++PR +
Sbjct: 219 TETRILNGKNSDTYIIPRPL 238


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
            Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 16/51 (31%), Positives = 22/51 (43%)
 Frame = +3

Query: 372  CLYGTSMAAQPTKLMGTILIPTSYLVLFTRIHSVEEITSSLCVIRINTTWS 524
            C YG S   QP        +  S L     I  V E+++ LC+   +T WS
Sbjct: 1733 CRYGVSFETQPNLNFQNSEL--SRLQTKMHIPGVIELSNHLCLTASSTEWS 1781


>SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 489

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = -1

Query: 282 RILSAGSGRSLYRLSSVLDSTAFGELVKTGPDR-IFGLSSILVCAVSA 142
           ++    +G  LY++S   DS    E VKTG  R +  +S   V  VSA
Sbjct: 256 KVKRVSTGEVLYKISGKWDSEMSVESVKTGETRPLLDVSKHDVYLVSA 303


>SPBC211.07c |ubc8||ubiquitin conjugating enzyme
           Ubc8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 184

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = +3

Query: 468 SVEEITSSLCVIRINTTWS 524
           +++E++ S+C+  IN TWS
Sbjct: 76  NIDELSGSVCLDVINQTWS 94


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1427

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -2

Query: 242 SVAFWTALRSGSWLKPAPIESSDYLLFWYAL 150
           S+ FW AL SG+ L    + SS   L+ YA+
Sbjct: 878 SIHFWIALWSGNSLFSLKLPSSFSFLWGYAI 908


>SPAC13G7.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 135

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 21  EAIETFYAPTKPFVNTFSRNIQHSHRG 101
           E  +T   P K F+N   RN+Q  +RG
Sbjct: 36  EKEKTKLRPNKVFLNNMVRNVQSHNRG 62


>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -3

Query: 376 RQIFGSFRYEIQGAIFAPQVFARAVD-PNV 290
           R I  SFR    G +FA  V AR +D PN+
Sbjct: 333 RSITESFRKCQSGILFATDVVARGMDFPNI 362


>SPBC3B9.12 |||TRAPP complex subunit Trs23 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 132

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 420 TILIPTSYLVLFTRIHSVEEITSSL 494
           T L P  YLVL   IH V  I++ +
Sbjct: 24  TALTPNEYLVLAGTIHGVHAISTQI 48


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,447,154
Number of Sequences: 5004
Number of extensions: 53523
Number of successful extensions: 149
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)