Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt8m08
(549 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82259-3|CAB05127.1| 368|Caenorhabditis elegans Hypothetical pr... 126 8e-30
Z80223-3|CAB02317.1| 369|Caenorhabditis elegans Hypothetical pr... 122 2e-28
AL110479-26|CAB54376.1| 385|Caenorhabditis elegans Hypothetical... 121 3e-28
AL110479-25|CAB60321.1| 388|Caenorhabditis elegans Hypothetical... 121 3e-28
Z29560-1|CAA82655.1| 367|Caenorhabditis elegans Hypothetical pr... 117 5e-27
AC006618-2|AAK68249.1| 340|Caenorhabditis elegans Glutamine syn... 102 2e-22
U70844-4|AAB09095.2| 1105|Caenorhabditis elegans Hypothetical pr... 28 5.1
>Z82259-3|CAB05127.1| 368|Caenorhabditis elegans Hypothetical
protein C28D4.3 protein.
Length = 368
Score = 126 bits (305), Expect = 8e-30
Identities = 56/107 (52%), Positives = 73/107 (68%)
Frame = +2
Query: 224 LSKTLLSRYNDLPLPADKILATYIWIDGSGEHLRCKDRTLNFIPKAPKDLPIWNFDGSST 403
L + + + LP K ATY+WIDG+GEHLR K RT+N P+ + PIWN+DGSST
Sbjct: 12 LGQATIDHFMGLPAHPTKCQATYVWIDGTGEHLRAKTRTINTKPQYLSEYPIWNYDGSST 71
Query: 404 NQADGHNSDTYLVPRAIYKDPFRRGNHILVMCDTYKYNMEPTESNNR 544
QADG NSD YL P A++ DPF G ++LVMCDT + M+PT +N+R
Sbjct: 72 GQADGLNSDRYLRPVAVFPDPFLGGLNVLVMCDTLDHEMKPTATNHR 118
>Z80223-3|CAB02317.1| 369|Caenorhabditis elegans Hypothetical
protein F26D10.10 protein.
Length = 369
Score = 122 bits (293), Expect = 2e-28
Identities = 53/107 (49%), Positives = 72/107 (67%)
Frame = +2
Query: 224 LSKTLLSRYNDLPLPADKILATYIWIDGSGEHLRCKDRTLNFIPKAPKDLPIWNFDGSST 403
L + + + LP K ATY+WIDG+GE LR K RT N P+ + PIWN+DGSST
Sbjct: 12 LGQATIDHFMGLPAHPSKCQATYVWIDGTGEQLRAKTRTFNLKPQYLSEYPIWNYDGSST 71
Query: 404 NQADGHNSDTYLVPRAIYKDPFRRGNHILVMCDTYKYNMEPTESNNR 544
QA+G NSD YL P A++ DPF +G+++LVMC+T M+PT +N+R
Sbjct: 72 GQAEGLNSDRYLRPVAVFPDPFLQGHNVLVMCETLDETMKPTATNHR 118
>AL110479-26|CAB54376.1| 385|Caenorhabditis elegans Hypothetical
protein Y105C5B.28b protein.
Length = 385
Score = 121 bits (292), Expect = 3e-28
Identities = 54/87 (62%), Positives = 65/87 (74%)
Frame = +2
Query: 284 ATYIWIDGSGEHLRCKDRTLNFIPKAPKDLPIWNFDGSSTNQADGHNSDTYLVPRAIYKD 463
A YIWIDGSGE++R K RT +F P P+ LPIWNFDGSST QA+G +SD YL P AIY D
Sbjct: 30 ALYIWIDGSGENIRAKTRTFDFEPTDPEKLPIWNFDGSSTGQAEGADSDVYLKPVAIYPD 89
Query: 464 PFRRGNHILVMCDTYKYNMEPTESNNR 544
PFR+G + LVMC+TY +PT +N R
Sbjct: 90 PFRQGKNKLVMCETYDNKKKPTATNYR 116
>AL110479-25|CAB60321.1| 388|Caenorhabditis elegans Hypothetical
protein Y105C5B.28a protein.
Length = 388
Score = 121 bits (292), Expect = 3e-28
Identities = 54/87 (62%), Positives = 65/87 (74%)
Frame = +2
Query: 284 ATYIWIDGSGEHLRCKDRTLNFIPKAPKDLPIWNFDGSSTNQADGHNSDTYLVPRAIYKD 463
A YIWIDGSGE++R K RT +F P P+ LPIWNFDGSST QA+G +SD YL P AIY D
Sbjct: 33 ALYIWIDGSGENIRAKTRTFDFEPTDPEKLPIWNFDGSSTGQAEGADSDVYLKPVAIYPD 92
Query: 464 PFRRGNHILVMCDTYKYNMEPTESNNR 544
PFR+G + LVMC+TY +PT +N R
Sbjct: 93 PFRQGKNKLVMCETYDNKKKPTATNYR 119
>Z29560-1|CAA82655.1| 367|Caenorhabditis elegans Hypothetical
protein K03H1.1 protein.
Length = 367
Score = 117 bits (282), Expect = 5e-27
Identities = 54/107 (50%), Positives = 72/107 (67%)
Frame = +2
Query: 224 LSKTLLSRYNDLPLPADKILATYIWIDGSGEHLRCKDRTLNFIPKAPKDLPIWNFDGSST 403
L ++ ++ L KI ATY+WIDG+GE+LR K RT + +PK +D PIWN+DGSST
Sbjct: 12 LGTAVIDQFLGLRPHPTKIQATYVWIDGTGENLRSKTRTFDKLPKRIEDYPIWNYDGSST 71
Query: 404 NQADGHNSDTYLVPRAIYKDPFRRGNHILVMCDTYKYNMEPTESNNR 544
QA G +SD YL P A Y DPF G + LVMCDT + M+PT +++R
Sbjct: 72 GQAKGRDSDRYLRPVAAYPDPFLGGGNKLVMCDTLDHQMQPTATSHR 118
>AC006618-2|AAK68249.1| 340|Caenorhabditis elegans Glutamine
synthetase (glutamate-ammonia ligase) protein 1 protein.
Length = 340
Score = 102 bits (244), Expect = 2e-22
Identities = 42/85 (49%), Positives = 60/85 (70%)
Frame = +2
Query: 290 YIWIDGSGEHLRCKDRTLNFIPKAPKDLPIWNFDGSSTNQADGHNSDTYLVPRAIYKDPF 469
YIWID + E++R K +T +F PK P DLPIWNFDG+ST Q+ G SD Y+ P A+Y+DPF
Sbjct: 35 YIWIDATQENMRGKTKTFDFEPKTPSDLPIWNFDGTSTGQSLGEGSDVYIRPIALYRDPF 94
Query: 470 RRGNHILVMCDTYKYNMEPTESNNR 544
R G + + +C+T ++ +P +N R
Sbjct: 95 RPGPNKIALCETLTHDNKPHPTNTR 119
>U70844-4|AAB09095.2| 1105|Caenorhabditis elegans Hypothetical
protein ZK154.5 protein.
Length = 1105
Score = 27.9 bits (59), Expect = 5.1
Identities = 12/44 (27%), Positives = 21/44 (47%)
Frame = +2
Query: 137 KMADTAHTKIEDNPKILSGPVLTNSPNAVLSKTLLSRYNDLPLP 268
K + HT E P+IL P++ + P + + +N+L P
Sbjct: 375 KQEEQEHTNGEKKPEILDEPIIQDEPRTMRPHEHCAIFNNLSTP 418
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,599,958
Number of Sequences: 27780
Number of extensions: 302271
Number of successful extensions: 784
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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