Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8m07
         (392 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.            23   5.3  
AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha ...    23   5.3  
AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha ...    22   7.0  

>AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.
          Length = 3361

 Score = 22.6 bits (46), Expect = 5.3
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -3

Query: 300  PFGIIYDVNSSGIVVNDVDSS 238
            PF +IYD N +G V++  +S+
Sbjct: 2081 PFRLIYDWNGNGDVISIREST 2101


>AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha 1
           chain precursor protein.
          Length = 801

 Score = 22.6 bits (46), Expect = 5.3
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +1

Query: 79  GSDGLPGVQDNPG 117
           G+DGLPG+   PG
Sbjct: 184 GTDGLPGLSGLPG 196



 Score = 21.8 bits (44), Expect = 9.2
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +1

Query: 79  GSDGLPGVQDNPG 117
           G DG PG++  PG
Sbjct: 619 GEDGTPGLRGEPG 631


>AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha 1
           chain protein.
          Length = 1024

 Score = 22.2 bits (45), Expect = 7.0
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +1

Query: 79  GSDGLPGVQDNPGGVYVADDNPG 147
           G DG+PG    PG   V  D PG
Sbjct: 78  GRDGMPGAPGLPGSKGVKGD-PG 99



 Score = 21.8 bits (44), Expect = 9.2
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +1

Query: 73  RLGSDGLPGVQDNPG 117
           R G+DGLPG Q   G
Sbjct: 607 RPGNDGLPGPQGQRG 621


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 372,921
Number of Sequences: 2352
Number of extensions: 7352
Number of successful extensions: 26
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 563,979
effective HSP length: 58
effective length of database: 427,563
effective search space used: 30784536
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)