Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt8m03
(553 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces p... 111 9e-26
SPBC18A7.02c |||seven transmembrane receptor-like protein|Schizo... 26 3.2
SPBC30D10.03c |||IMP 5'-nucleotidase |Schizosaccharomyces pombe|... 25 7.4
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |... 25 7.4
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces... 25 9.8
SPBC106.07c |||N alpha-acetyltransferase Nat2 |Schizosaccharomyc... 25 9.8
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce... 25 9.8
SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit |Schiz... 25 9.8
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c... 25 9.8
>SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 301
Score = 111 bits (266), Expect = 9e-26
Identities = 58/136 (42%), Positives = 80/136 (58%), Gaps = 13/136 (9%)
Frame = +1
Query: 184 YTGTSTEQDTRFSDKEKKLMKQMKFGDCLTQQVDMSKVKLDVLKPWITQKITEILNMEDD 363
Y G + EQ+T F+ +KKLM+ KF +VDM KV ++VLKPWI ++ E++ ED+
Sbjct: 5 YKGVAAEQETLFTTADKKLMRSTKFPASYDTKVDMKKVNIEVLKPWIATRLNELIGFEDE 64
Query: 364 VVIEYVTNQLEEKFPC-------------PKKMQINLTGFLNGKNARLFMGELWELLLSA 504
VVI +V LEE P+K+Q+NLTGFL NA F ELW L++SA
Sbjct: 65 VVINFVYGMLEEAVEASKTSDSQNESTLDPRKVQLNLTGFLE-SNATAFTEELWSLIISA 123
Query: 505 QASENGIPESFTQQKK 552
++ GIPE F +KK
Sbjct: 124 SQNQYGIPEKFILEKK 139
>SPBC18A7.02c |||seven transmembrane receptor-like
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 457
Score = 26.2 bits (55), Expect = 3.2
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = -2
Query: 93 MISQIGYTQYKINQLRSYRTTMPSPLLICIF 1
+I GYT+Y N T PL+IC F
Sbjct: 262 LILSWGYTRYSTNMRDRLFTEAKIPLIICFF 292
>SPBC30D10.03c |||IMP 5'-nucleotidase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 405
Score = 25.0 bits (52), Expect = 7.4
Identities = 20/80 (25%), Positives = 35/80 (43%)
Frame = +1
Query: 274 QQVDMSKVKLDVLKPWITQKITEILNMEDDVVIEYVTNQLEEKFPCPKKMQINLTGFLNG 453
Q VD L V+K W +I EIL+ ++ + + + K+ + GF+
Sbjct: 239 QWVDADSWMLPVMKTWPHDEILEILDTAEETLRSCIQGLNIDAKIVRKERSV---GFVPS 295
Query: 454 KNARLFMGELWELLLSAQAS 513
+L +L E +L QA+
Sbjct: 296 LGQKLRREQLEEAVLETQAT 315
>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 649
Score = 25.0 bits (52), Expect = 7.4
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Frame = +1
Query: 157 DFSVSKMMMYTGTSTEQDTRFSDKEKKLMKQMKFGDCLTQQ-VDMSKVKLDV-LKPWITQ 330
DF + + S EQD+ ++KK+ Q + + TQ D ++ + ++ + Q
Sbjct: 319 DFVLPNGQSNSDLSVEQDSAIFKEQKKMKIQKRMRELETQSFADDDDLQQSIAMQRRLAQ 378
Query: 331 KITEILNMEDDVVIEYVTNQLE 396
K +IL ED V E + N E
Sbjct: 379 KRAKILKPED--VAEQLQNAEE 398
>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 967
Score = 24.6 bits (51), Expect = 9.8
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +1
Query: 322 ITQKITEILNMEDDVVIEYVTNQLEEKFPCPKKMQIN 432
+T IT+ E+D EYV + K P P K N
Sbjct: 369 VTHTITK--TEENDSTTEYVNTESSSKTPAPHKHTFN 403
>SPBC106.07c |||N alpha-acetyltransferase Nat2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 167
Score = 24.6 bits (51), Expect = 9.8
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = -2
Query: 144 GVNLWGYKAPLLGVRTPMISQIGYTQYKI-NQLRSY 40
G+++ + A + VRT +IGY ++ I N +R Y
Sbjct: 71 GISVLDFSASFVLVRTLGAERIGYLEHSILNSIRRY 106
>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1210
Score = 24.6 bits (51), Expect = 9.8
Identities = 8/31 (25%), Positives = 18/31 (58%)
Frame = -3
Query: 446 RNPVKLICIFFGHGNFSSSWLVTYSMTTSSS 354
R P KL+ FFGH + + + ++++ + +
Sbjct: 1108 REPFKLVLEFFGHADTNMRYKISWTQLNTQA 1138
>SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1473
Score = 24.6 bits (51), Expect = 9.8
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Frame = +1
Query: 307 VLKPWITQKITEIL--NMEDDVVIEYVTNQLEEKFPCPKKMQINLTGFLNGKNARLFMGE 480
VL+PW+ K+ E+L + + V+E +T+ L K+ P + + + +G + LF
Sbjct: 294 VLRPWLPSKLQEVLPTSTKRLTVLEPITS-LPRKWD-PLYLDVLSSFVASGSSIELF-AV 350
Query: 481 LWELLLSAQASE 516
+ L S QA+E
Sbjct: 351 RYGLSSSEQATE 362
>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1274
Score = 24.6 bits (51), Expect = 9.8
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = +1
Query: 139 YTGRSIDFSVSKMMMYTGTSTEQDTRFSD-KEKKLMK-QMKFGDC 267
Y +ID V + + GT+ E + S+ KE L+ ++KFGDC
Sbjct: 992 YERENIDAGVVESFV-VGTNIEGEQYASELKENSLLTGELKFGDC 1035
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,336,307
Number of Sequences: 5004
Number of extensions: 48002
Number of successful extensions: 122
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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