Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt8m03
(553 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0509 - 9003330-9003446,9003587-9003673,9004113-9004280,900... 134 4e-32
08_02_0672 - 19904353-19904839,19905646-19905704,19906137-199063... 39 0.003
01_01_0908 + 7158172-7158356,7159436-7159866,7159953-7161061,716... 31 0.81
09_04_0528 - 18348071-18348136,18348477-18351209 28 5.7
05_01_0550 + 4820086-4821255,4822112-4822321,4822429-4822524,482... 28 5.7
01_01_0573 + 4253484-4254653,4255526-4255735,4255842-4255937,425... 28 5.7
04_03_0491 - 16519274-16519552,16519945-16520195,16520317-165204... 27 7.5
11_01_0027 - 199196-199396,199514-199651,200207-200284,200419-20... 27 10.0
09_06_0122 + 20990754-20991263,20992635-20992748 27 10.0
06_03_0223 - 18391177-18391287,18391570-18392081,18392200-183930... 27 10.0
04_04_0173 - 23294511-23294601,23294719-23294849,23295160-232954... 27 10.0
>03_02_0509 -
9003330-9003446,9003587-9003673,9004113-9004280,
9004835-9004957,9005081-9005170,9005275-9005295
Length = 201
Score = 134 bits (324), Expect = 4e-32
Identities = 64/123 (52%), Positives = 86/123 (69%)
Frame = +1
Query: 184 YTGTSTEQDTRFSDKEKKLMKQMKFGDCLTQQVDMSKVKLDVLKPWITQKITEILNMEDD 363
+ GTS +QDTRFS+K+ KL+K KF L VDM+KVK+DV+KPWI ++TE+L ED+
Sbjct: 6 FRGTSADQDTRFSNKQAKLLKTQKFAPELEHLVDMTKVKMDVMKPWIATRVTELLGFEDE 65
Query: 364 VVIEYVTNQLEEKFPCPKKMQINLTGFLNGKNARLFMGELWELLLSAQASENGIPESFTQ 543
V+I ++ LEEK KK+QI LTGF+ KN FM ELW LLLSAQ + +G+P+ F
Sbjct: 66 VLINFIYGLLEEKEADGKKIQIQLTGFME-KNTVKFMKELWSLLLSAQQNASGVPQQFLD 124
Query: 544 QKK 552
K+
Sbjct: 125 AKE 127
>08_02_0672 - 19904353-19904839,19905646-19905704,19906137-19906352,
19906845-19907422,19907506-19908180,19908263-19908653,
19909469-19909621,19909727-19909980,19911023-19911479
Length = 1089
Score = 38.7 bits (86), Expect = 0.003
Identities = 16/63 (25%), Positives = 37/63 (58%)
Frame = +1
Query: 310 LKPWITQKITEILNMEDDVVIEYVTNQLEEKFPCPKKMQINLTGFLNGKNARLFMGELWE 489
++PWI +KI E L E+ +++Y+ + ++ K +++ L L+ A +F+ ++W
Sbjct: 843 MRPWIAKKIIEFLGEEESTLVDYIVSCTKDHVQASKMLEL-LQSILD-VEAEMFVLKMWR 900
Query: 490 LLL 498
+L+
Sbjct: 901 MLI 903
>01_01_0908 +
7158172-7158356,7159436-7159866,7159953-7161061,
7161372-7162820
Length = 1057
Score = 30.7 bits (66), Expect = 0.81
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = +1
Query: 229 EKKLMKQMKFGDCLTQQVDMSKVKLDVLKPWITQKITEILN 351
+KKLMK+ + T Q D+S KL KP + ++EI+N
Sbjct: 339 DKKLMKKQQHSKKRTAQADVSDAKLCRRKPKKVRLLSEIIN 379
>09_04_0528 - 18348071-18348136,18348477-18351209
Length = 932
Score = 27.9 bits (59), Expect = 5.7
Identities = 15/68 (22%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
Frame = +1
Query: 232 KKLMKQMKFGDCLTQQVDMSKVKLDVLKPWITQKITEILNMEDDVVIEYV----TNQLEE 399
+++ K+++ + +++ M+ K +V++ WI Q + + + +DVV E++ N+ ++
Sbjct: 49 RQIKKELEIINAFLKELGMNGYKGEVVETWIRQ-VRRLAHDMEDVVDEFMYVVGKNKHKK 107
Query: 400 KFPCPKKM 423
+ C KK+
Sbjct: 108 SWACVKKI 115
>05_01_0550 +
4820086-4821255,4822112-4822321,4822429-4822524,
4822610-4822828,4823201-4823395,4823466-4823612,
4823712-4823861,4825015-4825145,4825234-4825477
Length = 853
Score = 27.9 bits (59), Expect = 5.7
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -3
Query: 539 VNDSGIPFSLACALSNSSHNSPMKRRAFFPFRNPV 435
VND G PFS+A + S N+ ++ FP +PV
Sbjct: 391 VND-GFPFSIALSCKPDSENTESEQTIVFPKGSPV 424
>01_01_0573 +
4253484-4254653,4255526-4255735,4255842-4255937,
4256034-4256255,4256829-4257023,4257097-4257243,
4257323-4257472,4257762-4257892,4257978-4258194
Length = 845
Score = 27.9 bits (59), Expect = 5.7
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -3
Query: 539 VNDSGIPFSLACALSNSSHNSPMKRRAFFPFRNPV 435
VND G PFS+A + S N ++ FP NP+
Sbjct: 391 VND-GFPFSIAMSWKPDSQNGDNQQTVVFPKGNPL 424
>04_03_0491 -
16519274-16519552,16519945-16520195,16520317-16520408,
16520409-16520605,16521462-16521501,16522915-16522994
Length = 312
Score = 27.5 bits (58), Expect = 7.5
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +1
Query: 145 GRSIDFSVSKMMMYTGTSTEQDT-RFSDKEKKLMKQMKFGDCLTQQVDM 288
GR DF + +Y GT +Q+ FS ++ K+ +FG+ Q +M
Sbjct: 122 GRQKDFKAKGISIYQGTGEQQEAPSFSRRKCNNKKKSRFGEDDGNQQEM 170
>11_01_0027 -
199196-199396,199514-199651,200207-200284,200419-200604,
200754-200846,201665-201731,202374-202675
Length = 354
Score = 27.1 bits (57), Expect = 10.0
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -2
Query: 441 SSQVDLHFLWAWELFFKLVGDIF 373
+S +DL + WAW L++ G +F
Sbjct: 69 ASSIDLAWAWAWPLYWAAQGTMF 91
>09_06_0122 + 20990754-20991263,20992635-20992748
Length = 207
Score = 27.1 bits (57), Expect = 10.0
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -1
Query: 268 GNLQTSFASSASSPCH*SG 212
G L +SF +A+SPCH SG
Sbjct: 38 GLLPSSFVDAAASPCHASG 56
>06_03_0223 -
18391177-18391287,18391570-18392081,18392200-18393019,
18393603-18393671,18393973-18394062,18395381-18395575
Length = 598
Score = 27.1 bits (57), Expect = 10.0
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -3
Query: 449 FRNPVKLICIFFGHGNFSSSWLVTYSMTTSSSMFRISV 336
F + VKL FGHG S W+ Y++ +SS +++
Sbjct: 520 FNSRVKL----FGHGKLRSKWMGPYTVVDASSQGAVTL 553
>04_04_0173 -
23294511-23294601,23294719-23294849,23295160-23295483,
23296016-23296147,23296225-23296373,23296536-23296670,
23296997-23297090,23297199-23297318,23298096-23298182,
23298273-23298386,23299089-23299270,23299960-23300023,
23300191-23300337,23300636-23300845,23301048-23301217,
23301355-23301477,23301589-23301661,23301765-23301857
Length = 812
Score = 27.1 bits (57), Expect = 10.0
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +1
Query: 250 MKFGDCLTQQVDMSKVKLDVLKPWITQKITEILNMEDDVVIEYVTNQL 393
M+FG+ L + + VK DVL+P I +I E+L ++T QL
Sbjct: 477 MEFGN-LRSFIKLFGVKCDVLEPTILFRIIEVLQSTYKAGNLHITEQL 523
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,830,202
Number of Sequences: 37544
Number of extensions: 294151
Number of successful extensions: 670
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 669
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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