Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8m02
         (666 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb...    28   1.1  
SPBP4H10.16c |||phosphatase activator |Schizosaccharomyces pombe...    28   1.4  
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c...    26   4.2  
SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase P...    26   5.6  
SPCC1020.08 |||wybutosine biosynthesis protein Tyw1|Schizosaccha...    26   5.6  
SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner me...    25   7.4  

>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 990

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 16/57 (28%), Positives = 27/57 (47%)
 Frame = -2

Query: 662 GQRXVVDVLTQISASIFGAHSPGGVFRACIIEFLTYSFNIKLSMDPDCSVCCTDMIS 492
           G+  ++DV      + F   S    F+A +I FLT+S ++ L       + C  MI+
Sbjct: 679 GESPIIDVEQSTQETTFWQQSCIAEFQAKLISFLTHSESMALQYSDVVGLICKIMIA 735


>SPBP4H10.16c |||phosphatase activator |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 295

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 369 PTAQVQTHPRFHKLLVFQSKQARTC 295
           P +  +  P +HKLL+F  K AR C
Sbjct: 231 PVSDPEYFPVYHKLLLFWQKPARKC 255


>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1274

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -1

Query: 375 VSPTAQVQTHPRFHKLLVFQ-SKQARTCVYFLFLVYLKVSRLPN 247
           V PTA    H  F K+L +  S ++R CV+ + +  +K S + N
Sbjct: 661 VDPTALAPGH-HFGKVLAYDASNESRRCVFEIPVTVMKPSSISN 703


>SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase
           Ppk21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = +3

Query: 177 DFLFKPIIMVTGFGPFANHPVNASWE--AVKLLDKQEIENKHRCELVLIE 320
           D++F  II    F          SW+  A+K+LDK+ I  +++ + V IE
Sbjct: 53  DYVFGDIIGDGSFSKVRRATDKKSWKEYAIKVLDKKYIVKENKVKYVNIE 102


>SPCC1020.08 |||wybutosine biosynthesis protein
           Tyw1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 688

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = +3

Query: 276 QEIENKHRCELVLIEIPVTYENVDEFVPALWETHTPKLMI 395
           +E      C L L+  P+ Y  ++EFV  L E      ++
Sbjct: 413 EEASRVRHCALSLVGEPIFYPYINEFVSMLHEREISSFLV 452


>SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner
           membrane translocase Oxa102|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 409

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -1

Query: 618 HLWSSQPWWS 589
           H+WS  PWW+
Sbjct: 108 HIWSGLPWWA 117


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,656,645
Number of Sequences: 5004
Number of extensions: 54961
Number of successful extensions: 147
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)