Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt8m02
(666 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_03_0072 + 14266286-14266552,14266860-14266964,14267063-142671... 40 0.002
07_03_1442 - 26565339-26565578,26566227-26566274,26566352-265664... 39 0.004
01_01_1112 + 8808544-8808695,8808818-8808961,8809302-8809380,880... 34 0.088
09_04_0014 + 13760333-13760590,13760751-13760855,13760934-137609... 31 0.62
04_01_0267 + 3584117-3584922,3585331-3585361 29 3.3
03_02_0803 + 11365959-11366390,11366470-11366502,11367158-113672... 29 4.4
02_05_0978 - 33242938-33242988,33243729-33243911,33244458-332445... 29 4.4
07_03_1182 - 24610862-24611637,24612223-24612340,24612441-246141... 28 5.8
07_03_0943 - 22778877-22780970,22781376-22781480,22781481-227820... 28 5.8
>03_03_0072 +
14266286-14266552,14266860-14266964,14267063-14267110,
14267851-14268099
Length = 222
Score = 39.9 bits (89), Expect = 0.002
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 2/93 (2%)
Frame = +3
Query: 387 LMIHVGVSSIANELTLEVQAHKKGYQRL-DYFDKCPANH-VCTADGAVRIHTKLNVERIC 560
+++H GV+S LE QA + R D P + ++DG++ K V
Sbjct: 88 ILLHFGVNSGTTRFALENQAINEATFRCPDELGWKPQRAPIVSSDGSISNLRKTTVP--V 145
Query: 561 KEFNDASPEDSTRAVSSKDAGRYLCEYIYYXSL 659
E N + + S DAGR++C Y+YY SL
Sbjct: 146 NEVNKSLQQMGFDVAPSDDAGRFVCNYVYYQSL 178
>07_03_1442 -
26565339-26565578,26566227-26566274,26566352-26566456,
26566628-26566885
Length = 216
Score = 38.7 bits (86), Expect = 0.004
Identities = 31/93 (33%), Positives = 42/93 (45%), Gaps = 4/93 (4%)
Frame = +3
Query: 393 IHVGVSSIANELTLEVQAHKKGYQRL-DYFDKCPAN-HVCTADGAVRI--HTKLNVERIC 560
IH GV+S A LE QA + R D P + +DGA+ T L V +
Sbjct: 87 IHFGVNSGATRFALENQAVNEATFRCPDELGWKPQRVPIVPSDGAISRTRETTLPVNELT 146
Query: 561 KEFNDASPEDSTRAVSSKDAGRYLCEYIYYXSL 659
K + + S DAGR++C Y+YY SL
Sbjct: 147 KSLRKTGYD----VMPSDDAGRFVCNYVYYHSL 175
>01_01_1112 +
8808544-8808695,8808818-8808961,8809302-8809380,
8809477-8809555,8810338-8810377,8810455-8810589,
8810901-8811038,8811596-8811881
Length = 350
Score = 34.3 bits (75), Expect = 0.088
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = -1
Query: 378 CVSPTAQVQTHPRFHKLLVFQSKQARTCVYFLFLVYL--KVSRLPNLRSLDD 229
C SP + + +F + +R C +F FL++L S L NLRSL D
Sbjct: 57 CTSPAKKTELEMLGMDASIFDATSSRCCFFFFFLLFLFFVPSSLTNLRSLQD 108
>09_04_0014 +
13760333-13760590,13760751-13760855,13760934-13760981,
13761450-13761503,13761670-13761900
Length = 231
Score = 31.5 bits (68), Expect = 0.62
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +3
Query: 609 SKDAGRYLCEYIYYXSL 659
S DAGR++C Y+YY SL
Sbjct: 177 SDDAGRFVCNYVYYHSL 193
>04_01_0267 + 3584117-3584922,3585331-3585361
Length = 278
Score = 29.1 bits (62), Expect = 3.3
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = -2
Query: 545 IKLSMDPDCSVCCTDMIS 492
I+LS+ P C++CCT +S
Sbjct: 254 IELSLSPSCTICCTPRLS 271
>03_02_0803 +
11365959-11366390,11366470-11366502,11367158-11367214,
11367784-11367945,11367987-11368139,11368218-11368295,
11368377-11368469,11368981-11369071,11369091-11369209
Length = 405
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 586 KTPPGL*APKMLADICVSTSTTHRC 660
+ PPG AP ++ D+C S HRC
Sbjct: 20 RPPPG--APPLIEDVCFSLDAGHRC 42
>02_05_0978 -
33242938-33242988,33243729-33243911,33244458-33244520,
33244656-33246083
Length = 574
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -2
Query: 557 YSFNIKLSMDPDCSVCCTDMISRTFVKIIQTLIAFLM 447
Y FN+KL +DPD C + + + V + Q +I L+
Sbjct: 307 YFFNLKLQIDPDAFACAIEKLPQ-LVSLHQNIILKLV 342
>07_03_1182 -
24610862-24611637,24612223-24612340,24612441-24614120,
24614253-24614320,24615370-24615550
Length = 940
Score = 28.3 bits (60), Expect = 5.8
Identities = 19/77 (24%), Positives = 36/77 (46%)
Frame = +3
Query: 408 SSIANELTLEVQAHKKGYQRLDYFDKCPANHVCTADGAVRIHTKLNVERICKEFNDASPE 587
S IA + LE + G +D ++ P A+ + H + R C++ ++ P+
Sbjct: 309 SVIAKLMGLEEAPNATGVLTVDSYE--PERSPRPAEDTQKEHPVPSPRRFCQDPRESLPK 366
Query: 588 DSTRAVSSKDAGRYLCE 638
D + A+ +K + R L E
Sbjct: 367 DESPAMKTKPSPRILTE 383
>07_03_0943 -
22778877-22780970,22781376-22781480,22781481-22782059,
22782149-22782187,22782340-22782372
Length = 949
Score = 28.3 bits (60), Expect = 5.8
Identities = 18/68 (26%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Frame = +3
Query: 261 KLLDKQEIENKHRCELVLIEIPVTYEN-VDEFVPAL-WETHTPKLMIHVGVSSIANELTL 434
K++ K++ ++KH +L + ++P YE+ V VP+ THT IH ++ ++
Sbjct: 713 KMVLKEKSQDKHVIDLNIPQVPSDYESAVSYIVPSSDKNTHTMDRSIHSSETNRMDDCLP 772
Query: 435 EVQAHKKG 458
++ A G
Sbjct: 773 DINASCNG 780
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,184,003
Number of Sequences: 37544
Number of extensions: 312455
Number of successful extensions: 735
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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