Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8l23
         (440 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0585 + 4332352-4332445,4332552-4332667                           78   3e-15
06_03_0967 - 26395537-26396590,26400918-26401111                       48   4e-06
08_01_0649 + 5607234-5608397,5609358-5609513,5609598-5609796,561...    28   2.9  
11_01_0768 - 6442332-6443792                                           27   5.1  
06_01_0763 + 5712466-5712721,5714302-5715743                           27   5.1  

>02_01_0585 + 4332352-4332445,4332552-4332667
          Length = 69

 Score = 78.2 bits (184), Expect = 3e-15
 Identities = 39/68 (57%), Positives = 45/68 (66%)
 Frame = +3

Query: 93  MDQIAXFVEPGXQFAKDSIRLVRRCTKPDRKEFQKIAIATAXXXXXXXXXXXXVKLIHIP 272
           MD +   V+P  +FAKDS+RLV+RC KPDRKEF K+A  TA            VKLI IP
Sbjct: 1   MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKEFTKVAARTAIGFVVMGFVGFFVKLIFIP 60

Query: 273 INNIIVGS 296
           INNIIVGS
Sbjct: 61  INNIIVGS 68


>06_03_0967 - 26395537-26396590,26400918-26401111
          Length = 415

 Score = 47.6 bits (108), Expect = 4e-06
 Identities = 21/37 (56%), Positives = 28/37 (75%)
 Frame = +3

Query: 93  MDQIAXFVEPGXQFAKDSIRLVRRCTKPDRKEFQKIA 203
           MD I   V+P  +FAKDS+RLV+RC KPDRK  +++A
Sbjct: 1   MDAIDSVVDPLREFAKDSVRLVKRCHKPDRKGRERLA 37


>08_01_0649 +
           5607234-5608397,5609358-5609513,5609598-5609796,
           5612419-5613608,5614505-5614660,5614742-5615041
          Length = 1054

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
 Frame = -1

Query: 293 ADNYVINGDMNQLYKESNEAHDAKSDGCXN--GNLLEFFPIRFC--ASSH*SDGVLSELL 126
           AD Y  NGD    Y+ +   HD+ + G  N  GNL   FP++    AS+H  + +L  LL
Sbjct: 338 ADEYSSNGDPGDEYRGNYVNHDSANYGRANKFGNL--NFPVKSIVDASAHEGELLLRRLL 395


>11_01_0768 - 6442332-6443792
          Length = 486

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 129 QFAKDSIRLVRRCTKPDR 182
           QF KD+I  V+ C KPD+
Sbjct: 112 QFTKDAIAAVQECKKPDK 129


>06_01_0763 + 5712466-5712721,5714302-5715743
          Length = 565

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +2

Query: 203 HCXSHRILHHGLHWILCKADSY 268
           +C  HR   H + W++ + DSY
Sbjct: 280 YCDDHRQFLHRVQWVILRTDSY 301


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,092,533
Number of Sequences: 37544
Number of extensions: 118459
Number of successful extensions: 192
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 835800280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)