Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8l20
         (582 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.14c |||peroxin-3 |Schizosaccharomyces pombe|chr 1|||Manual    32   0.053
SPAC1071.12c |stp1|SPAC926.01c|low molecular weight phosphotyros...    32   0.070
SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting pr...    27   2.6  
SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogam...    27   2.6  
SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc...    27   2.6  
SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|...    27   2.6  
SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces po...    26   3.5  
SPAC1556.02c |sdh1||succinate dehydrogenase Sdh1|Schizosaccharom...    26   4.6  
SPAC22E12.01 ||SPAC890.09|triose phosphate transporter |Schizosa...    25   6.1  
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc...    25   8.1  
SPBC1683.02 |||adenine deaminase |Schizosaccharomyces pombe|chr ...    25   8.1  

>SPAC29A4.14c |||peroxin-3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 346

 Score = 32.3 bits (70), Expect = 0.053
 Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
 Frame = +2

Query: 233 LKPEVVKGFVNMVQFGLLPRGEIFTLYVDRQLKETVTMFYMLYYAKDFATFIKTACWMR- 409
           L   VV+ FVN  QF +    E+    + +Q   T  + Y +   +DFAT +  +  M+ 
Sbjct: 217 LTTRVVEVFVNNYQFSIDGNKEVLLAEIPKQYIVTGNLLYRVLELEDFATQMDASIVMKN 276

Query: 410 --LNVNEGMFVY 439
             + +NE M  Y
Sbjct: 277 ELIALNEHMLTY 288


>SPAC1071.12c |stp1|SPAC926.01c|low molecular weight phosphotyrosine
           protein phosphatase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 156

 Score = 31.9 bits (69), Expect = 0.070
 Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
 Frame = +1

Query: 127 DARYEAAQS-GDGASYVQGNRRDRQKFQV*RQQGLFLKTRSRE----GFREHGPIWPLTS 291
           +AR++   S G GA +V GNR D +  +V ++ G+  K  +R+     F+    I+ + S
Sbjct: 35  EARFDTIDSCGTGAWHV-GNRPDPRTLEVLKKNGIHTKHLARKLSTSDFKNFDYIFAMDS 93

Query: 292 G*NIHSIRRPSTEGNRDNVL 351
             N+ +I R   +G+R  V+
Sbjct: 94  S-NLRNINRVKPQGSRAKVM 112


>SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting
           protein homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 455

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -3

Query: 433 KHPLVYIESHPAGGLNECGKVLCVIEHVEHC 341
           KHPL    +  A     CGK++C++E +  C
Sbjct: 201 KHPL----NEAAPNCLNCGKIICIVEGIGPC 227


>SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogamy
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +1

Query: 322 STEGNRDNVLHALLRKGLCHIH*DRLLDETQCKRG 426
           +TE   DN +H+ ++  LC     ++L  ++C RG
Sbjct: 47  NTELTIDNRIHSAIQMTLCDFERSQILAPSECVRG 81


>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
           Fep1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 564

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
 Frame = +1

Query: 97  LRFNGHVSETDARYEAAQSGD-GASYVQGNRRDRQKFQV*RQQGLFLKTRSREGFREHG 270
           L FNG+ +E+    +   SGD G+S  Q + RD    +            S EG  EHG
Sbjct: 222 LVFNGNANESQHNLKRMSSGDSGSSVKQQSTRDGPFSKSFPNGNGHASGNSGEGLAEHG 280


>SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 8/54 (14%)
 Frame = -3

Query: 268 HVHETLHDFGF*ETILVVFKLETFADLFDFLV--------HNWLHHPIEQLHNE 131
           +V++ L ++G+     + F +  F    DFL+        H WL+ P+ +LH++
Sbjct: 138 YVYDKLDEYGY---FYLFFSIALFLLFSDFLIYWIHRALHHRWLYAPLHKLHHK 188


>SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 521

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 429 IPSFTLSLIQQAVLMNVAKSFA 364
           IPSF +SLI Q  + N   SF+
Sbjct: 480 IPSFNISLISQNAVANAGNSFS 501


>SPAC1556.02c |sdh1||succinate dehydrogenase
           Sdh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 641

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 4   VLATGCLHNEGYRGVGGWL 60
           +   GCL  EG RG GG+L
Sbjct: 293 IYGAGCLITEGCRGEGGYL 311


>SPAC22E12.01 ||SPAC890.09|triose phosphate transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +2

Query: 233 LKPEVVKGFVNMVQFGLLPRGEIFTLYVDRQLKETVTMFYMLYYAKD 373
           L P  +  F+   +FGL+ +  I TL V   LKE +T+     +  D
Sbjct: 282 LVPGTLAFFMVASEFGLIQKTSIVTLSVCGILKEIITIIASTLFYHD 328


>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
           Prp22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1168

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +2

Query: 122 KQMLVMKLLNRVMEPVMYKEIEEIGKSFKFED 217
           +++  M +  RV E V  +  EE+G + +FED
Sbjct: 565 RRVAAMSVAKRVAEEVGCRVGEEVGYTIRFED 596


>SPBC1683.02 |||adenine deaminase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 339

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 131 LVMKLLNRVMEPVMYKEIEEIGKSFKFED 217
           L +KL +R   P+    IEEI +S+ F D
Sbjct: 28  LKLKLSHRNKIPLKQSSIEEIKESYNFHD 56


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,419,206
Number of Sequences: 5004
Number of extensions: 50012
Number of successful extensions: 154
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)