Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8l20
         (582 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0511 + 3806475-3806876,3807914-3808039,3808120-3808193,380...    29   2.7  
01_01_1170 - 9318332-9318461,9318551-9318613,9318694-9318744,931...    28   6.2  

>07_01_0511 +
           3806475-3806876,3807914-3808039,3808120-3808193,
           3808278-3808347,3808431-3808486,3808578-3808649,
           3808678-3808811,3808967-3809030,3809111-3809240,
           3809326-3809541,3809629-3809750,3810527-3810701,
           3810788-3810878,3811040-3811197,3811330-3811518,
           3813257-3813340,3813362-3813536,3815300-3815955,
           3816226-3816648,3816752-3816790
          Length = 1151

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +2

Query: 476 KGIVLPAPYEIYPYYFVRGDVIQKAYLL 559
           KG+ L AP+ IY   FV GDV  + +LL
Sbjct: 266 KGLSLDAPFLIYVCRFVHGDVKPENFLL 293


>01_01_1170 -
           9318332-9318461,9318551-9318613,9318694-9318744,
           9318837-9318921,9319005-9319068,9319139-9319340,
           9319808-9320502
          Length = 429

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 10/32 (31%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -3

Query: 406 HPAG-GLNECGKVLCVIEHVEHCHGFLQLTVY 314
           HP   G+N+ G   C++  ++ CH  LQ  ++
Sbjct: 316 HPIDLGMNQAGLAECIVRAIQACHPHLQPVLF 347


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,118,555
Number of Sequences: 37544
Number of extensions: 350398
Number of successful extensions: 957
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 957
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)