Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8l17
         (633 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom...    27   2.3  
SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1 |Schizosaccharo...    26   3.9  
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po...    26   5.2  
SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase Cdc...    25   9.1  
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce...    25   9.1  

>SPAC3G9.14 |sak1||transcriptional repressor
           Sak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 766

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = -1

Query: 513 RPLPE*SSSILPGATAFIPSALP 445
           +P+P+ SSS +PG ++ +P+  P
Sbjct: 311 QPMPQFSSSFVPGTSSIVPTLHP 333


>SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 651

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 13/23 (56%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = -2

Query: 413 WNELPST-VFPERNDISFFKRGL 348
           WN   S+ V P+RN IS F RGL
Sbjct: 44  WNFFDSSPVTPQRNPISLFVRGL 66


>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1057

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -3

Query: 373 TYPSSKEACGQHLTVGSGLARPLALLKSMGDG 278
           TYP++K+    ++TVG  L+  +A+L   G G
Sbjct: 700 TYPNAKKKSLDNVTVGLSLSSRVAILGPNGAG 731


>SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase
           Cdc25|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 596

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 12/47 (25%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +1

Query: 238 FFMYPTAHMMLSGYRRPWTSAMPRAEPSRCLPLS-AAHKPLLKKDMS 375
           F  YP  +++  GY+  + +   R +P   +P++ A+H     K M+
Sbjct: 508 FLYYPEVYILHGGYKSFYENHKNRCDPINYVPMNDASHVMTCTKAMN 554


>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +1

Query: 349 KPLLKKDMSFRSGNTVEGSSFQSRMVRGKKDLWK 450
           KPL  K ++ +   TV+ +S Q  ++RG K++ K
Sbjct: 30  KPLAPKKLNKKMMKTVKKASKQKHILRGVKEVVK 63


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,696,557
Number of Sequences: 5004
Number of extensions: 57645
Number of successful extensions: 139
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)