Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8l17
         (633 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0457 + 17916177-17916526,17917397-17917523,17917887-179182...    29   4.1  
04_04_0118 - 22889608-22890816,22891990-22892261,22892306-228931...    29   4.1  
02_04_0335 + 22117902-22119869                                         28   5.4  
04_04_1657 - 35102751-35102868,35102987-35103504,35104065-351042...    28   7.1  
05_04_0298 + 19954904-19954985,19955075-19955888,19955962-19956922     27   9.4  

>11_04_0457 +
           17916177-17916526,17917397-17917523,17917887-17918287,
           17918496-17918704,17919328-17919449,17920437-17920562,
           17920675-17920801,17920945-17921000
          Length = 505

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 21/69 (30%), Positives = 28/69 (40%)
 Frame = +1

Query: 295 SAMPRAEPSRCLPLSAAHKPLLKKDMSFRSGNTVEGSSFQSRMVRGKKDLWKRTGDERSG 474
           +A P    S C P+ AAH  + +  +          SS  S    GK+D+    GD  S 
Sbjct: 55  AARPTCASSGCFPVPAAHSRMRRSSL-----RCAASSSTLSLAKAGKEDMVAEDGDGSSR 109

Query: 475 SR*YG*TLL 501
              YG T L
Sbjct: 110 PAAYGSTSL 118


>04_04_0118 - 22889608-22890816,22891990-22892261,22892306-22893131,
            22893311-22893534,22893620-22893936,22894035-22894294,
            22894723-22894923,22895015-22895190,22895445-22895718
          Length = 1252

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +3

Query: 351  ASFEEGYVISLGKHRGGELIPKPDGTWQK-RSLEAHWG 461
            A  ++G V+  G H  GEL+ +PDG + +   L+ H G
Sbjct: 1217 AVVQDGRVVEQGSH--GELVSRPDGAYSRLLQLQLHHG 1252


>02_04_0335 + 22117902-22119869
          Length = 655

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 19/42 (45%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = +3

Query: 279 PSPMDFSNAKGRAK-PLPTVKCCPQA-SFEEGYVISLGKHRG 398
           PSP   S+A  R+K P P      ++ SF E  V+SLG HRG
Sbjct: 85  PSPEMGSSAARRSKAPAPATLFSQRSFSFTEPGVLSLGLHRG 126


>04_04_1657 -
           35102751-35102868,35102987-35103504,35104065-35104211,
           35104289-35106262,35106964-35107089,35107178-35107264,
           35107335-35107424,35107725-35107811,35108248-35108300,
           35109339-35109387
          Length = 1082

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -3

Query: 397 PRCFPSEMTYPSSKEACGQHLTVG 326
           P C PS + Y   K  CG  LT+G
Sbjct: 497 PTCVPSLIDYNFHKAVCGHTLTIG 520


>05_04_0298 + 19954904-19954985,19955075-19955888,19955962-19956922
          Length = 618

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
 Frame = -2

Query: 449 FQRSFLPRTIRLWNELPSTVFPERND----ISFFKRGLWAALNGRQRLGSAL-GIAEVHG 285
           + R+ +PR  RL          +R      IS     + AA+ GR+R  +A  G+ +  G
Sbjct: 396 YDRALVPRLRRLTGHPAGITHLQRTGVGLAISAVSNAVAAAVEGRRRRAAASHGLLDEPG 455

Query: 284 RR*PLSIMW 258
              P+S++W
Sbjct: 456 ATVPMSVLW 464


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,661,579
Number of Sequences: 37544
Number of extensions: 405853
Number of successful extensions: 973
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 955
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 973
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)